Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00754

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00751 and H281DRAFT_00752 are separated by 162 nucleotidesH281DRAFT_00752 and H281DRAFT_00753 are separated by 205 nucleotidesH281DRAFT_00753 and H281DRAFT_00754 overlap by 41 nucleotidesH281DRAFT_00754 and H281DRAFT_00755 are separated by 58 nucleotides H281DRAFT_00751: H281DRAFT_00751 - hypothetical protein, at 845,026 to 845,217 _00751 H281DRAFT_00752: H281DRAFT_00752 - hypothetical protein, at 845,380 to 845,664 _00752 H281DRAFT_00753: H281DRAFT_00753 - Protein of unknown function (DUF1488), at 845,870 to 846,154 _00753 H281DRAFT_00754: H281DRAFT_00754 - Nucleoside-diphosphate-sugar epimerase, at 846,114 to 847,112 _00754 H281DRAFT_00755: H281DRAFT_00755 - transcriptional regulator, TetR family, at 847,171 to 848,166 _00755 Position (kb) 846 847 848Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 845.320 kb on + strandat 845.330 kb on - strandat 845.350 kb on - strandat 845.350 kb on - strandat 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strandat 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strand, within H281DRAFT_00752at 845.417 kb on - strand, within H281DRAFT_00752at 845.494 kb on + strand, within H281DRAFT_00752at 845.495 kb on - strandat 845.632 kb on + strand, within H281DRAFT_00752at 845.688 kb on - strandat 845.792 kb on + strandat 845.798 kb on - strandat 845.798 kb on - strandat 845.798 kb on - strandat 845.798 kb on - strandat 846.061 kb on - strand, within H281DRAFT_00753at 846.206 kb on - strandat 846.294 kb on + strand, within H281DRAFT_00754at 846.295 kb on - strand, within H281DRAFT_00754at 846.385 kb on + strand, within H281DRAFT_00754at 846.385 kb on + strand, within H281DRAFT_00754at 846.386 kb on - strand, within H281DRAFT_00754at 846.452 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.505 kb on + strand, within H281DRAFT_00754at 846.529 kb on - strand, within H281DRAFT_00754at 846.576 kb on + strand, within H281DRAFT_00754at 846.613 kb on + strandat 846.766 kb on + strand, within H281DRAFT_00754at 846.767 kb on - strandat 846.869 kb on - strandat 846.886 kb on + strand, within H281DRAFT_00754at 846.887 kb on - strand, within H281DRAFT_00754at 846.923 kb on + strand, within H281DRAFT_00754at 846.923 kb on + strand, within H281DRAFT_00754at 847.118 kb on + strandat 847.320 kb on + strand, within H281DRAFT_00755at 847.320 kb on + strand, within H281DRAFT_00755at 847.400 kb on - strand, within H281DRAFT_00755at 847.453 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.535 kb on - strand, within H281DRAFT_00755at 847.568 kb on - strand, within H281DRAFT_00755at 847.597 kb on + strand, within H281DRAFT_00755at 847.598 kb on - strand, within H281DRAFT_00755

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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845,320 + +0.4
845,330 - +0.1
845,350 - +0.1
845,350 - +0.9
845,416 + H281DRAFT_00752 0.13 +0.3
845,416 + +0.6
845,416 + H281DRAFT_00752 0.13 +0.7
845,416 + H281DRAFT_00752 0.13 +0.3
845,416 + H281DRAFT_00752 0.13 +2.5
845,417 - H281DRAFT_00752 0.13 +1.0
845,494 + H281DRAFT_00752 0.40 +0.7
845,495 - -1.3
845,632 + H281DRAFT_00752 0.88 +0.0
845,688 - -0.3
845,792 + -0.7
845,798 - -0.2
845,798 - -0.1
845,798 - +0.2
845,798 - -0.4
846,061 - H281DRAFT_00753 0.67 -0.3
846,206 - -0.4
846,294 + H281DRAFT_00754 0.18 -3.3
846,295 - H281DRAFT_00754 0.18 +0.2
846,385 + H281DRAFT_00754 0.27 -0.4
846,385 + H281DRAFT_00754 0.27 -0.6
846,386 - H281DRAFT_00754 0.27 -0.2
846,452 - H281DRAFT_00754 0.34 +0.4
846,471 - H281DRAFT_00754 0.36 -0.0
846,471 - H281DRAFT_00754 0.36 +1.2
846,471 - H281DRAFT_00754 0.36 -0.9
846,505 + H281DRAFT_00754 0.39 -0.3
846,529 - H281DRAFT_00754 0.42 +0.1
846,576 + H281DRAFT_00754 0.46 -0.8
846,613 + +0.0
846,766 + H281DRAFT_00754 0.65 +0.0
846,767 - +0.6
846,869 - +0.0
846,886 + H281DRAFT_00754 0.77 -0.4
846,887 - H281DRAFT_00754 0.77 +0.3
846,923 + H281DRAFT_00754 0.81 -2.3
846,923 + H281DRAFT_00754 0.81 +0.3
847,118 + +0.3
847,320 + H281DRAFT_00755 0.15 -1.3
847,320 + H281DRAFT_00755 0.15 -1.2
847,400 - H281DRAFT_00755 0.23 -2.3
847,453 + H281DRAFT_00755 0.28 -2.5
847,534 + H281DRAFT_00755 0.36 -1.4
847,534 + H281DRAFT_00755 0.36 -2.3
847,534 + H281DRAFT_00755 0.36 -0.8
847,535 - H281DRAFT_00755 0.37 -1.1
847,568 - H281DRAFT_00755 0.40 +0.5
847,597 + H281DRAFT_00755 0.43 -2.3
847,598 - H281DRAFT_00755 0.43 -2.4

Or see this region's nucleotide sequence