Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00465 and H281DRAFT_00466 are separated by 266 nucleotides H281DRAFT_00466 and H281DRAFT_00467 are separated by 85 nucleotides
H281DRAFT_00465: H281DRAFT_00465 - PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase, at 518,384 to 520,909
_00465
H281DRAFT_00466: H281DRAFT_00466 - pyruvate dehydrogenase E1 component, at 521,176 to 523,872
_00466
H281DRAFT_00467: H281DRAFT_00467 - pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase), at 523,958 to 525,646
_00467
Position (kb) 521
522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 520.222 kb on - strand, within H281DRAFT_00465 at 520.912 kb on + strand at 520.913 kb on - strand at 520.925 kb on - strand at 520.925 kb on - strand at 520.925 kb on - strand at 520.925 kb on - strand at 520.925 kb on - strand at 520.977 kb on + strand at 520.977 kb on + strand at 520.978 kb on - strand at 521.094 kb on + strand at 521.094 kb on + strand at 521.095 kb on - strand at 521.095 kb on - strand at 521.158 kb on + strand at 521.160 kb on + strand at 523.870 kb on + strand at 524.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 520,222 - H281DRAFT_00465 0.73 -3.6 520,912 + +0.6 520,913 - -1.1 520,925 - -0.4 520,925 - -0.2 520,925 - +0.2 520,925 - +0.1 520,925 - +0.3 520,977 + -0.2 520,977 + -0.6 520,978 - -0.5 521,094 + +0.2 521,094 + -2.1 521,095 - -0.6 521,095 - -0.2 521,158 + +0.1 521,160 + -1.7 523,870 + -0.1 524,000 + +1.0
Or see this region's nucleotide sequence