Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06000 and H281DRAFT_06001 are separated by 95 nucleotides H281DRAFT_06001 and H281DRAFT_06002 overlap by 4 nucleotides H281DRAFT_06002 and H281DRAFT_06003 are separated by 271 nucleotides
H281DRAFT_06000: H281DRAFT_06000 - transcriptional regulator, AraC family, at 2,015 to 2,806
_06000
H281DRAFT_06001: H281DRAFT_06001 - hypothetical protein, at 2,902 to 3,186
_06001
H281DRAFT_06002: H281DRAFT_06002 - NADPH:quinone reductase, at 3,183 to 4,136
_06002
H281DRAFT_06003: H281DRAFT_06003 - Pimeloyl-ACP methyl ester carboxylesterase, at 4,408 to 5,202
_06003
Position (kb) 3
4
5 Strain fitness (log2 ratio) -1
0
1 at 2.836 kb on + strand at 2.837 kb on - strand at 2.878 kb on + strand at 3.330 kb on + strand, within H281DRAFT_06002 at 3.586 kb on + strand, within H281DRAFT_06002 at 3.974 kb on - strand, within H281DRAFT_06002 at 4.081 kb on + strand at 4.127 kb on + strand at 4.260 kb on + strand at 4.261 kb on - strand at 4.402 kb on - strand at 4.526 kb on + strand, within H281DRAFT_06003 at 4.736 kb on + strand, within H281DRAFT_06003 at 4.904 kb on + strand, within H281DRAFT_06003 at 4.905 kb on - strand, within H281DRAFT_06003 at 4.908 kb on + strand, within H281DRAFT_06003
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 2,836 + -0.3 2,837 - +0.1 2,878 + +0.4 3,330 + H281DRAFT_06002 0.15 -0.6 3,586 + H281DRAFT_06002 0.42 -0.3 3,974 - H281DRAFT_06002 0.83 -0.4 4,081 + -0.6 4,127 + -0.1 4,260 + -1.5 4,261 - +0.7 4,402 - -0.5 4,526 + H281DRAFT_06003 0.15 +0.4 4,736 + H281DRAFT_06003 0.41 +0.0 4,904 + H281DRAFT_06003 0.62 +0.5 4,905 - H281DRAFT_06003 0.63 +1.5 4,908 + H281DRAFT_06003 0.63 +0.4
Or see this region's nucleotide sequence