Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05866 and H281DRAFT_05867 are separated by 188 nucleotides H281DRAFT_05867 and H281DRAFT_05868 are separated by 47 nucleotides H281DRAFT_05868 and H281DRAFT_05869 are separated by 40 nucleotides H281DRAFT_05869 and H281DRAFT_05870 are separated by 266 nucleotides
H281DRAFT_05866: H281DRAFT_05866 - AraC family transcriptional regulator, activator of mtrCDE, at 3,583 to 4,644
_05866
H281DRAFT_05867: H281DRAFT_05867 - uncharacterized peroxidase-related enzyme, at 4,833 to 5,369
_05867
H281DRAFT_05868: H281DRAFT_05868 - 2-Methylisocitrate lyase, PEP mutase family, at 5,417 to 6,241
_05868
H281DRAFT_05869: H281DRAFT_05869 - 2-iminobutanoate/2-iminopropanoate deaminase, at 6,282 to 6,674
_05869
H281DRAFT_05870: H281DRAFT_05870 - amino acid ABC transporter substrate-binding protein, PAAT family, at 6,941 to 7,792
_05870
Position (kb) 5
6
7 Strain fitness (log2 ratio) -1
0
1
2 at 4.756 kb on - strand at 4.833 kb on - strand at 4.859 kb on + strand at 5.079 kb on + strand, within H281DRAFT_05867 at 5.080 kb on - strand, within H281DRAFT_05867 at 5.083 kb on + strand, within H281DRAFT_05867 at 5.963 kb on + strand, within H281DRAFT_05868 at 6.007 kb on - strand, within H281DRAFT_05868 at 6.036 kb on + strand, within H281DRAFT_05868 at 6.252 kb on + strand at 6.571 kb on - strand, within H281DRAFT_05869 at 6.653 kb on - strand at 6.653 kb on - strand at 6.736 kb on + strand at 6.834 kb on + strand at 7.126 kb on + strand, within H281DRAFT_05870 at 7.127 kb on - strand, within H281DRAFT_05870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,756 - -0.5 4,833 - +0.3 4,859 + +0.0 5,079 + H281DRAFT_05867 0.46 +0.3 5,080 - H281DRAFT_05867 0.46 +1.3 5,083 + H281DRAFT_05867 0.47 -0.7 5,963 + H281DRAFT_05868 0.66 -0.6 6,007 - H281DRAFT_05868 0.72 +0.4 6,036 + H281DRAFT_05868 0.75 +0.4 6,252 + +0.0 6,571 - H281DRAFT_05869 0.74 -1.1 6,653 - +0.1 6,653 - +0.2 6,736 + +0.6 6,834 + +2.3 7,126 + H281DRAFT_05870 0.22 +0.0 7,127 - H281DRAFT_05870 0.22 -0.9
Or see this region's nucleotide sequence