Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05806

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05805 and H281DRAFT_05806 overlap by 4 nucleotidesH281DRAFT_05806 and H281DRAFT_05807 overlap by 8 nucleotides H281DRAFT_05805: H281DRAFT_05805 - dipeptide transport system ATP-binding protein, at 81,048 to 82,052 _05805 H281DRAFT_05806: H281DRAFT_05806 - dipeptide transport system ATP-binding protein, at 82,049 to 83,068 _05806 H281DRAFT_05807: H281DRAFT_05807 - hypothetical protein, at 83,061 to 84,233 _05807 Position (kb) 82 83 84Strain fitness (log2 ratio) -2 -1 0 1at 81.058 kb on + strandat 81.059 kb on - strandat 81.059 kb on - strandat 81.098 kb on - strandat 81.308 kb on + strand, within H281DRAFT_05805at 81.309 kb on - strand, within H281DRAFT_05805at 81.354 kb on + strand, within H281DRAFT_05805at 81.366 kb on + strand, within H281DRAFT_05805at 81.720 kb on + strand, within H281DRAFT_05805at 81.720 kb on + strand, within H281DRAFT_05805at 81.720 kb on + strand, within H281DRAFT_05805at 81.720 kb on + strand, within H281DRAFT_05805at 81.720 kb on + strand, within H281DRAFT_05805at 81.720 kb on + strand, within H281DRAFT_05805at 81.720 kb on + strand, within H281DRAFT_05805at 81.721 kb on - strand, within H281DRAFT_05805at 81.721 kb on - strand, within H281DRAFT_05805at 81.721 kb on - strand, within H281DRAFT_05805at 81.721 kb on - strand, within H281DRAFT_05805at 81.912 kb on + strand, within H281DRAFT_05805at 81.912 kb on + strand, within H281DRAFT_05805at 81.912 kb on + strand, within H281DRAFT_05805at 81.912 kb on + strand, within H281DRAFT_05805at 81.913 kb on - strand, within H281DRAFT_05805at 81.913 kb on - strand, within H281DRAFT_05805at 82.131 kb on - strandat 82.465 kb on - strand, within H281DRAFT_05806at 82.543 kb on + strand, within H281DRAFT_05806at 82.543 kb on + strand, within H281DRAFT_05806at 82.544 kb on - strand, within H281DRAFT_05806at 82.644 kb on + strand, within H281DRAFT_05806at 82.706 kb on + strand, within H281DRAFT_05806at 82.706 kb on + strand, within H281DRAFT_05806at 82.706 kb on + strand, within H281DRAFT_05806at 82.707 kb on - strand, within H281DRAFT_05806at 82.707 kb on - strand, within H281DRAFT_05806at 82.707 kb on - strand, within H281DRAFT_05806at 82.707 kb on - strand, within H281DRAFT_05806at 82.744 kb on + strand, within H281DRAFT_05806at 82.745 kb on - strand, within H281DRAFT_05806at 82.769 kb on + strand, within H281DRAFT_05806at 82.770 kb on - strand, within H281DRAFT_05806at 82.770 kb on - strand, within H281DRAFT_05806at 82.770 kb on - strand, within H281DRAFT_05806at 82.770 kb on - strand, within H281DRAFT_05806at 82.833 kb on - strand, within H281DRAFT_05806at 82.965 kb on - strand, within H281DRAFT_05806at 83.193 kb on + strand, within H281DRAFT_05807at 83.246 kb on + strand, within H281DRAFT_05807at 83.246 kb on + strand, within H281DRAFT_05807at 83.246 kb on + strand, within H281DRAFT_05807at 83.246 kb on + strand, within H281DRAFT_05807at 83.408 kb on + strand, within H281DRAFT_05807at 83.418 kb on + strand, within H281DRAFT_05807at 83.438 kb on + strand, within H281DRAFT_05807at 83.448 kb on + strand, within H281DRAFT_05807at 83.448 kb on + strand, within H281DRAFT_05807at 83.449 kb on - strand, within H281DRAFT_05807at 83.449 kb on - strand, within H281DRAFT_05807at 83.575 kb on + strand, within H281DRAFT_05807at 83.575 kb on + strand, within H281DRAFT_05807at 83.576 kb on - strand, within H281DRAFT_05807at 83.604 kb on + strand, within H281DRAFT_05807at 83.605 kb on - strand, within H281DRAFT_05807at 83.751 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strandat 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.813 kb on - strandat 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.815 kb on - strand, within H281DRAFT_05807at 83.815 kb on - strand, within H281DRAFT_05807at 83.924 kb on + strand, within H281DRAFT_05807at 83.924 kb on + strandat 83.925 kb on - strand, within H281DRAFT_05807

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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81,058 + -0.8
81,059 - +1.2
81,059 - -0.2
81,098 - +0.4
81,308 + H281DRAFT_05805 0.26 +0.2
81,309 - H281DRAFT_05805 0.26 -0.4
81,354 + H281DRAFT_05805 0.30 -0.5
81,366 + H281DRAFT_05805 0.32 -0.2
81,720 + H281DRAFT_05805 0.67 -0.5
81,720 + H281DRAFT_05805 0.67 -0.2
81,720 + H281DRAFT_05805 0.67 +0.5
81,720 + H281DRAFT_05805 0.67 -0.1
81,720 + H281DRAFT_05805 0.67 -0.1
81,720 + H281DRAFT_05805 0.67 -1.1
81,720 + H281DRAFT_05805 0.67 -0.0
81,721 - H281DRAFT_05805 0.67 -1.4
81,721 - H281DRAFT_05805 0.67 -1.2
81,721 - H281DRAFT_05805 0.67 -1.3
81,721 - H281DRAFT_05805 0.67 -0.9
81,912 + H281DRAFT_05805 0.86 -0.0
81,912 + H281DRAFT_05805 0.86 +0.1
81,912 + H281DRAFT_05805 0.86 +0.1
81,912 + H281DRAFT_05805 0.86 +0.3
81,913 - H281DRAFT_05805 0.86 -1.3
81,913 - H281DRAFT_05805 0.86 -0.6
82,131 - -2.1
82,465 - H281DRAFT_05806 0.41 -1.3
82,543 + H281DRAFT_05806 0.48 -1.0
82,543 + H281DRAFT_05806 0.48 +1.5
82,544 - H281DRAFT_05806 0.49 -1.1
82,644 + H281DRAFT_05806 0.58 +0.1
82,706 + H281DRAFT_05806 0.64 +0.0
82,706 + H281DRAFT_05806 0.64 -0.2
82,706 + H281DRAFT_05806 0.64 +0.6
82,707 - H281DRAFT_05806 0.65 -2.2
82,707 - H281DRAFT_05806 0.65 -0.2
82,707 - H281DRAFT_05806 0.65 -0.8
82,707 - H281DRAFT_05806 0.65 +0.7
82,744 + H281DRAFT_05806 0.68 -0.8
82,745 - H281DRAFT_05806 0.68 +0.3
82,769 + H281DRAFT_05806 0.71 -0.4
82,770 - H281DRAFT_05806 0.71 -0.1
82,770 - H281DRAFT_05806 0.71 -1.1
82,770 - H281DRAFT_05806 0.71 -0.7
82,770 - H281DRAFT_05806 0.71 -0.1
82,833 - H281DRAFT_05806 0.77 -0.7
82,965 - H281DRAFT_05806 0.90 -0.6
83,193 + H281DRAFT_05807 0.11 -0.3
83,246 + H281DRAFT_05807 0.16 -0.7
83,246 + H281DRAFT_05807 0.16 -1.8
83,246 + H281DRAFT_05807 0.16 +0.1
83,246 + H281DRAFT_05807 0.16 -0.9
83,408 + H281DRAFT_05807 0.30 +0.2
83,418 + H281DRAFT_05807 0.30 -1.1
83,438 + H281DRAFT_05807 0.32 -0.5
83,448 + H281DRAFT_05807 0.33 +0.1
83,448 + H281DRAFT_05807 0.33 -0.1
83,449 - H281DRAFT_05807 0.33 +0.1
83,449 - H281DRAFT_05807 0.33 -0.8
83,575 + H281DRAFT_05807 0.44 +1.1
83,575 + H281DRAFT_05807 0.44 +0.2
83,576 - H281DRAFT_05807 0.44 -0.4
83,604 + H281DRAFT_05807 0.46 -0.3
83,605 - H281DRAFT_05807 0.46 -0.3
83,751 + H281DRAFT_05807 0.59 -1.0
83,812 + +0.9
83,812 + H281DRAFT_05807 0.64 -0.2
83,812 + H281DRAFT_05807 0.64 -0.4
83,812 + H281DRAFT_05807 0.64 -0.5
83,812 + H281DRAFT_05807 0.64 -0.3
83,812 + H281DRAFT_05807 0.64 -1.1
83,812 + H281DRAFT_05807 0.64 -0.3
83,813 - -1.4
83,813 - H281DRAFT_05807 0.64 -0.2
83,813 - H281DRAFT_05807 0.64 -0.8
83,813 - H281DRAFT_05807 0.64 -1.2
83,813 - H281DRAFT_05807 0.64 +0.5
83,815 - H281DRAFT_05807 0.64 -0.6
83,815 - H281DRAFT_05807 0.64 +0.2
83,924 + H281DRAFT_05807 0.74 -0.1
83,924 + -0.4
83,925 - H281DRAFT_05807 0.74 -0.3

Or see this region's nucleotide sequence