Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05278

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05276 and H281DRAFT_05277 overlap by 1 nucleotidesH281DRAFT_05277 and H281DRAFT_05278 overlap by 1 nucleotidesH281DRAFT_05278 and H281DRAFT_05279 overlap by 4 nucleotidesH281DRAFT_05279 and H281DRAFT_05280 overlap by 4 nucleotides H281DRAFT_05276: H281DRAFT_05276 - malonate decarboxylase epsilon subunit, at 18,991 to 19,923 _05276 H281DRAFT_05277: H281DRAFT_05277 - phosphoribosyl-dephospho-CoA transferase, at 19,923 to 20,630 _05277 H281DRAFT_05278: H281DRAFT_05278 - malonate decarboxylase gamma subunit, at 20,630 to 21,445 _05278 H281DRAFT_05279: H281DRAFT_05279 - malonate decarboxylase beta subunit, at 21,442 to 22,329 _05279 H281DRAFT_05280: H281DRAFT_05280 - malonate decarboxylase delta subunit, at 22,326 to 22,640 _05280 Position (kb) 20 21 22Strain fitness (log2 ratio) -1 0 1at 19.809 kb on + strand, within H281DRAFT_05276at 20.778 kb on - strand, within H281DRAFT_05278at 21.021 kb on - strand, within H281DRAFT_05278at 21.093 kb on + strand, within H281DRAFT_05278at 21.093 kb on + strand, within H281DRAFT_05278at 21.094 kb on - strand, within H281DRAFT_05278at 21.489 kb on - strandat 21.771 kb on + strand, within H281DRAFT_05279

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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19,809 + H281DRAFT_05276 0.88 -0.2
20,778 - H281DRAFT_05278 0.18 -0.7
21,021 - H281DRAFT_05278 0.48 -0.1
21,093 + H281DRAFT_05278 0.57 -0.6
21,093 + H281DRAFT_05278 0.57 +0.2
21,094 - H281DRAFT_05278 0.57 -0.4
21,489 - -0.1
21,771 + H281DRAFT_05279 0.37 -0.8

Or see this region's nucleotide sequence