Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04547 and H281DRAFT_04548 are separated by 13 nucleotides H281DRAFT_04548 and H281DRAFT_04549 are separated by 16 nucleotides H281DRAFT_04549 and H281DRAFT_04550 overlap by 4 nucleotides H281DRAFT_04550 and H281DRAFT_04551 are separated by 355 nucleotides
H281DRAFT_04547: H281DRAFT_04547 - Uncharacterized membrane protein YckC, RDD family, at 279,789 to 280,346
_04547
H281DRAFT_04548: H281DRAFT_04548 - Protein of unknown function (DUF3106), at 280,360 to 281,118
_04548
H281DRAFT_04549: H281DRAFT_04549 - Protein of unknown function (DUF3619), at 281,135 to 281,563
_04549
H281DRAFT_04550: H281DRAFT_04550 - RNA polymerase, sigma-24 subunit, RpoE, at 281,560 to 282,123
_04550
H281DRAFT_04551: H281DRAFT_04551 - acetolactate synthase, large subunit, at 282,479 to 284,242
_04551
Position (kb) 281
282 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 280.222 kb on + strand, within H281DRAFT_04547 at 280.223 kb on - strand, within H281DRAFT_04547 at 280.223 kb on - strand at 281.045 kb on + strand at 281.111 kb on + strand at 281.111 kb on + strand at 281.112 kb on - strand at 281.112 kb on - strand at 281.154 kb on + strand at 281.178 kb on + strand, within H281DRAFT_04549 at 281.204 kb on + strand, within H281DRAFT_04549 at 281.205 kb on - strand, within H281DRAFT_04549 at 281.363 kb on - strand, within H281DRAFT_04549 at 281.563 kb on + strand at 281.564 kb on - strand at 281.679 kb on + strand, within H281DRAFT_04550 at 281.680 kb on - strand, within H281DRAFT_04550 at 281.680 kb on - strand, within H281DRAFT_04550 at 281.680 kb on - strand, within H281DRAFT_04550 at 281.725 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.940 kb on + strand, within H281DRAFT_04550 at 282.157 kb on - strand at 282.346 kb on + strand at 282.346 kb on + strand at 282.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 280,222 + H281DRAFT_04547 0.78 -0.3 280,223 - H281DRAFT_04547 0.78 +0.6 280,223 - -0.5 281,045 + -1.3 281,111 + -2.9 281,111 + -3.2 281,112 - -0.7 281,112 - -0.7 281,154 + +1.1 281,178 + H281DRAFT_04549 0.10 +0.4 281,204 + H281DRAFT_04549 0.16 +0.4 281,205 - H281DRAFT_04549 0.16 -1.5 281,363 - H281DRAFT_04549 0.53 -0.3 281,563 + +1.5 281,564 - +0.8 281,679 + H281DRAFT_04550 0.21 -4.1 281,680 - H281DRAFT_04550 0.21 -1.7 281,680 - H281DRAFT_04550 0.21 -3.2 281,680 - H281DRAFT_04550 0.21 -2.1 281,725 + H281DRAFT_04550 0.29 -1.1 281,889 + H281DRAFT_04550 0.58 -0.7 281,889 + H281DRAFT_04550 0.58 -1.6 281,889 + H281DRAFT_04550 0.58 +1.1 281,889 + H281DRAFT_04550 0.58 -1.0 281,889 + H281DRAFT_04550 0.58 -3.1 281,890 - H281DRAFT_04550 0.59 -2.1 281,890 - H281DRAFT_04550 0.59 -1.6 281,890 - H281DRAFT_04550 0.59 -1.5 281,890 - H281DRAFT_04550 0.59 -1.7 281,890 - H281DRAFT_04550 0.59 -1.5 281,940 + H281DRAFT_04550 0.67 -1.8 282,157 - -0.2 282,346 + +0.1 282,346 + -0.6 282,346 + -0.1
Or see this region's nucleotide sequence