Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04383 and H281DRAFT_04384 are separated by 88 nucleotides H281DRAFT_04384 and H281DRAFT_04385 are separated by 77 nucleotides H281DRAFT_04385 and H281DRAFT_04386 are separated by 18 nucleotides H281DRAFT_04386 and H281DRAFT_04387 are separated by 32 nucleotides
H281DRAFT_04383: H281DRAFT_04383 - diguanylate cyclase with GAF sensor, at 97,094 to 98,074
_04383
H281DRAFT_04384: H281DRAFT_04384 - ElaA protein, at 98,163 to 98,675
_04384
H281DRAFT_04385: H281DRAFT_04385 - putative membrane protein, at 98,753 to 99,649
_04385
H281DRAFT_04386: H281DRAFT_04386 - hypothetical protein, at 99,668 to 100,117
_04386
H281DRAFT_04387: H281DRAFT_04387 - protein SCO1/2, at 100,150 to 100,707
_04387
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.776 kb on + strand, within H281DRAFT_04383 at 97.776 kb on + strand, within H281DRAFT_04383 at 97.777 kb on - strand, within H281DRAFT_04383 at 97.891 kb on + strand, within H281DRAFT_04383 at 97.892 kb on - strand, within H281DRAFT_04383 at 97.892 kb on - strand, within H281DRAFT_04383 at 97.948 kb on + strand, within H281DRAFT_04383 at 97.967 kb on + strand, within H281DRAFT_04383 at 97.967 kb on + strand, within H281DRAFT_04383 at 98.027 kb on + strand at 98.027 kb on + strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.029 kb on + strand at 98.029 kb on + strand at 98.030 kb on - strand at 98.030 kb on - strand at 98.030 kb on - strand at 98.084 kb on + strand at 98.084 kb on + strand at 98.253 kb on + strand, within H281DRAFT_04384 at 98.254 kb on - strand, within H281DRAFT_04384 at 98.307 kb on + strand, within H281DRAFT_04384 at 98.307 kb on + strand, within H281DRAFT_04384 at 98.308 kb on - strand at 98.308 kb on - strand, within H281DRAFT_04384 at 98.410 kb on - strand, within H281DRAFT_04384 at 98.448 kb on - strand at 98.595 kb on + strand, within H281DRAFT_04384 at 98.596 kb on - strand, within H281DRAFT_04384 at 98.596 kb on - strand, within H281DRAFT_04384 at 98.596 kb on - strand, within H281DRAFT_04384 at 99.003 kb on + strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.237 kb on + strand, within H281DRAFT_04385 at 99.237 kb on + strand, within H281DRAFT_04385 at 99.237 kb on + strand, within H281DRAFT_04385 at 99.303 kb on - strand, within H281DRAFT_04385 at 99.468 kb on + strand, within H281DRAFT_04385 at 99.495 kb on + strand, within H281DRAFT_04385 at 99.495 kb on + strand, within H281DRAFT_04385 at 99.496 kb on - strand, within H281DRAFT_04385 at 99.496 kb on - strand, within H281DRAFT_04385 at 99.496 kb on - strand, within H281DRAFT_04385 at 99.496 kb on - strand, within H281DRAFT_04385 at 99.669 kb on + strand at 99.669 kb on + strand at 99.669 kb on + strand at 99.670 kb on - strand at 99.670 kb on - strand at 99.670 kb on - strand at 99.670 kb on - strand at 99.746 kb on + strand, within H281DRAFT_04386 at 99.746 kb on + strand, within H281DRAFT_04386 at 99.746 kb on + strand at 99.747 kb on - strand, within H281DRAFT_04386 at 99.975 kb on + strand, within H281DRAFT_04386 at 100.111 kb on + strand at 100.111 kb on + strand at 100.112 kb on - strand at 100.253 kb on + strand, within H281DRAFT_04387 at 100.253 kb on + strand, within H281DRAFT_04387 at 100.254 kb on - strand, within H281DRAFT_04387 at 100.254 kb on - strand, within H281DRAFT_04387 at 100.266 kb on + strand, within H281DRAFT_04387 at 100.266 kb on + strand at 100.266 kb on + strand, within H281DRAFT_04387 at 100.267 kb on - strand, within H281DRAFT_04387 at 100.267 kb on - strand, within H281DRAFT_04387 at 100.267 kb on - strand, within H281DRAFT_04387 at 100.280 kb on + strand, within H281DRAFT_04387 at 100.280 kb on + strand, within H281DRAFT_04387 at 100.404 kb on - strand, within H281DRAFT_04387 at 100.556 kb on + strand, within H281DRAFT_04387
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 97,776 + H281DRAFT_04383 0.70 -0.4 97,776 + H281DRAFT_04383 0.70 +0.1 97,777 - H281DRAFT_04383 0.70 +0.3 97,891 + H281DRAFT_04383 0.81 -1.5 97,892 - H281DRAFT_04383 0.81 +0.1 97,892 - H281DRAFT_04383 0.81 -0.5 97,948 + H281DRAFT_04383 0.87 +0.6 97,967 + H281DRAFT_04383 0.89 -0.4 97,967 + H281DRAFT_04383 0.89 -0.0 98,027 + -0.3 98,027 + +0.0 98,028 - +1.0 98,028 - -0.0 98,028 - -0.1 98,028 - -0.1 98,028 - +0.1 98,028 - +0.1 98,029 + -0.2 98,029 + +0.1 98,030 - +0.7 98,030 - -0.9 98,030 - -0.4 98,084 + +0.3 98,084 + -0.0 98,253 + H281DRAFT_04384 0.18 +0.4 98,254 - H281DRAFT_04384 0.18 +0.6 98,307 + H281DRAFT_04384 0.28 -1.2 98,307 + H281DRAFT_04384 0.28 +0.4 98,308 - +0.1 98,308 - H281DRAFT_04384 0.28 -0.8 98,410 - H281DRAFT_04384 0.48 +0.3 98,448 - +2.1 98,595 + H281DRAFT_04384 0.84 +0.1 98,596 - H281DRAFT_04384 0.84 -0.1 98,596 - H281DRAFT_04384 0.84 -0.0 98,596 - H281DRAFT_04384 0.84 -0.4 99,003 + H281DRAFT_04385 0.28 -1.3 99,006 - H281DRAFT_04385 0.28 -1.2 99,006 - H281DRAFT_04385 0.28 -0.9 99,006 - H281DRAFT_04385 0.28 -0.7 99,006 - H281DRAFT_04385 0.28 -0.7 99,006 - H281DRAFT_04385 0.28 -0.4 99,006 - H281DRAFT_04385 0.28 -1.3 99,237 + H281DRAFT_04385 0.54 -0.2 99,237 + H281DRAFT_04385 0.54 -1.6 99,237 + H281DRAFT_04385 0.54 -0.9 99,303 - H281DRAFT_04385 0.61 +0.2 99,468 + H281DRAFT_04385 0.80 -0.7 99,495 + H281DRAFT_04385 0.83 -1.4 99,495 + H281DRAFT_04385 0.83 -0.9 99,496 - H281DRAFT_04385 0.83 -0.8 99,496 - H281DRAFT_04385 0.83 -1.0 99,496 - H281DRAFT_04385 0.83 -2.0 99,496 - H281DRAFT_04385 0.83 -0.8 99,669 + -0.4 99,669 + -0.8 99,669 + +0.6 99,670 - -0.3 99,670 - -0.1 99,670 - +0.2 99,670 - +0.3 99,746 + H281DRAFT_04386 0.17 -1.9 99,746 + H281DRAFT_04386 0.17 -3.3 99,746 + -0.9 99,747 - H281DRAFT_04386 0.18 -1.6 99,975 + H281DRAFT_04386 0.68 -3.5 100,111 + -0.7 100,111 + -3.0 100,112 - -2.2 100,253 + H281DRAFT_04387 0.18 -2.3 100,253 + H281DRAFT_04387 0.18 -3.5 100,254 - H281DRAFT_04387 0.19 -1.3 100,254 - H281DRAFT_04387 0.19 -1.3 100,266 + H281DRAFT_04387 0.21 -2.5 100,266 + -1.3 100,266 + H281DRAFT_04387 0.21 -2.8 100,267 - H281DRAFT_04387 0.21 -0.3 100,267 - H281DRAFT_04387 0.21 -0.9 100,267 - H281DRAFT_04387 0.21 -0.6 100,280 + H281DRAFT_04387 0.23 -3.3 100,280 + H281DRAFT_04387 0.23 -1.7 100,404 - H281DRAFT_04387 0.46 -1.3 100,556 + H281DRAFT_04387 0.73 -2.7
Or see this region's nucleotide sequence