Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04382 and H281DRAFT_04383 are separated by 132 nucleotides H281DRAFT_04383 and H281DRAFT_04384 are separated by 88 nucleotides H281DRAFT_04384 and H281DRAFT_04385 are separated by 77 nucleotides
H281DRAFT_04382: H281DRAFT_04382 - hypothetical protein, at 96,203 to 96,961
_04382
H281DRAFT_04383: H281DRAFT_04383 - diguanylate cyclase with GAF sensor, at 97,094 to 98,074
_04383
H281DRAFT_04384: H281DRAFT_04384 - ElaA protein, at 98,163 to 98,675
_04384
H281DRAFT_04385: H281DRAFT_04385 - putative membrane protein, at 98,753 to 99,649
_04385
Position (kb) 97
98
99 Strain fitness (log2 ratio) -1
0
1
2 at 96.206 kb on + strand at 96.206 kb on + strand at 96.207 kb on - strand at 96.207 kb on - strand at 96.207 kb on - strand at 96.210 kb on + strand at 96.211 kb on - strand at 96.211 kb on - strand at 96.581 kb on + strand, within H281DRAFT_04382 at 96.581 kb on + strand, within H281DRAFT_04382 at 96.582 kb on - strand at 96.582 kb on - strand, within H281DRAFT_04382 at 96.582 kb on - strand, within H281DRAFT_04382 at 96.587 kb on + strand, within H281DRAFT_04382 at 96.837 kb on + strand, within H281DRAFT_04382 at 96.895 kb on - strand at 96.959 kb on + strand at 96.972 kb on - strand at 97.056 kb on + strand at 97.057 kb on - strand at 97.057 kb on - strand at 97.165 kb on + strand at 97.166 kb on - strand at 97.241 kb on - strand, within H281DRAFT_04383 at 97.350 kb on + strand, within H281DRAFT_04383 at 97.351 kb on - strand, within H281DRAFT_04383 at 97.430 kb on + strand, within H281DRAFT_04383 at 97.430 kb on + strand, within H281DRAFT_04383 at 97.431 kb on - strand, within H281DRAFT_04383 at 97.776 kb on + strand, within H281DRAFT_04383 at 97.776 kb on + strand, within H281DRAFT_04383 at 97.777 kb on - strand, within H281DRAFT_04383 at 97.891 kb on + strand, within H281DRAFT_04383 at 97.892 kb on - strand, within H281DRAFT_04383 at 97.892 kb on - strand, within H281DRAFT_04383 at 97.948 kb on + strand, within H281DRAFT_04383 at 97.967 kb on + strand, within H281DRAFT_04383 at 97.967 kb on + strand, within H281DRAFT_04383 at 98.027 kb on + strand at 98.027 kb on + strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.028 kb on - strand at 98.029 kb on + strand at 98.029 kb on + strand at 98.030 kb on - strand at 98.030 kb on - strand at 98.030 kb on - strand at 98.084 kb on + strand at 98.084 kb on + strand at 98.253 kb on + strand, within H281DRAFT_04384 at 98.254 kb on - strand, within H281DRAFT_04384 at 98.307 kb on + strand, within H281DRAFT_04384 at 98.307 kb on + strand, within H281DRAFT_04384 at 98.308 kb on - strand at 98.308 kb on - strand, within H281DRAFT_04384 at 98.410 kb on - strand, within H281DRAFT_04384 at 98.448 kb on - strand at 98.595 kb on + strand, within H281DRAFT_04384 at 98.596 kb on - strand, within H281DRAFT_04384 at 98.596 kb on - strand, within H281DRAFT_04384 at 98.596 kb on - strand, within H281DRAFT_04384 at 99.003 kb on + strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385 at 99.006 kb on - strand, within H281DRAFT_04385
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 96,206 + -0.5 96,206 + -0.2 96,207 - -0.3 96,207 - +0.2 96,207 - +0.5 96,210 + +1.5 96,211 - +0.2 96,211 - +0.1 96,581 + H281DRAFT_04382 0.50 -0.5 96,581 + H281DRAFT_04382 0.50 +0.2 96,582 - +0.7 96,582 - H281DRAFT_04382 0.50 +0.1 96,582 - H281DRAFT_04382 0.50 +0.4 96,587 + H281DRAFT_04382 0.51 -0.9 96,837 + H281DRAFT_04382 0.84 -0.6 96,895 - +0.8 96,959 + -0.6 96,972 - -0.4 97,056 + -0.1 97,057 - +0.2 97,057 - +0.3 97,165 + -0.4 97,166 - +1.8 97,241 - H281DRAFT_04383 0.15 +0.3 97,350 + H281DRAFT_04383 0.26 +0.1 97,351 - H281DRAFT_04383 0.26 +0.3 97,430 + H281DRAFT_04383 0.34 +0.0 97,430 + H281DRAFT_04383 0.34 -0.0 97,431 - H281DRAFT_04383 0.34 +0.1 97,776 + H281DRAFT_04383 0.70 -0.4 97,776 + H281DRAFT_04383 0.70 +0.1 97,777 - H281DRAFT_04383 0.70 +0.3 97,891 + H281DRAFT_04383 0.81 -1.5 97,892 - H281DRAFT_04383 0.81 +0.1 97,892 - H281DRAFT_04383 0.81 -0.5 97,948 + H281DRAFT_04383 0.87 +0.6 97,967 + H281DRAFT_04383 0.89 -0.4 97,967 + H281DRAFT_04383 0.89 -0.0 98,027 + -0.3 98,027 + +0.0 98,028 - +1.0 98,028 - -0.0 98,028 - -0.1 98,028 - -0.1 98,028 - +0.1 98,028 - +0.1 98,029 + -0.2 98,029 + +0.1 98,030 - +0.7 98,030 - -0.9 98,030 - -0.4 98,084 + +0.3 98,084 + -0.0 98,253 + H281DRAFT_04384 0.18 +0.4 98,254 - H281DRAFT_04384 0.18 +0.6 98,307 + H281DRAFT_04384 0.28 -1.2 98,307 + H281DRAFT_04384 0.28 +0.4 98,308 - +0.1 98,308 - H281DRAFT_04384 0.28 -0.8 98,410 - H281DRAFT_04384 0.48 +0.3 98,448 - +2.1 98,595 + H281DRAFT_04384 0.84 +0.1 98,596 - H281DRAFT_04384 0.84 -0.1 98,596 - H281DRAFT_04384 0.84 -0.0 98,596 - H281DRAFT_04384 0.84 -0.4 99,003 + H281DRAFT_04385 0.28 -1.3 99,006 - H281DRAFT_04385 0.28 -1.2 99,006 - H281DRAFT_04385 0.28 -0.9 99,006 - H281DRAFT_04385 0.28 -0.7 99,006 - H281DRAFT_04385 0.28 -0.7 99,006 - H281DRAFT_04385 0.28 -0.4 99,006 - H281DRAFT_04385 0.28 -1.3
Or see this region's nucleotide sequence