Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04034 and H281DRAFT_04035 are separated by 108 nucleotides H281DRAFT_04035 and H281DRAFT_04036 are separated by 415 nucleotides H281DRAFT_04036 and H281DRAFT_04037 are separated by 62 nucleotides H281DRAFT_04037 and H281DRAFT_04038 are separated by 50 nucleotides
H281DRAFT_04034: H281DRAFT_04034 - tRNA_Gly_CCC, at 135,552 to 135,625
_04034
H281DRAFT_04035: H281DRAFT_04035 - hypothetical protein, at 135,734 to 136,117
_04035
H281DRAFT_04036: H281DRAFT_04036 - tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33), at 136,533 to 137,321
_04036
H281DRAFT_04037: H281DRAFT_04037 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 137,384 to 138,235
_04037
H281DRAFT_04038: H281DRAFT_04038 - Protein of unknown function (DUF1439), at 138,286 to 138,876
_04038
Position (kb) 136
137
138 Strain fitness (log2 ratio) -1
0
1
2 at 135.542 kb on - strand at 135.562 kb on + strand, within H281DRAFT_04034 at 135.562 kb on + strand, within H281DRAFT_04034 at 135.562 kb on + strand, within H281DRAFT_04034 at 135.565 kb on - strand, within H281DRAFT_04034 at 135.565 kb on - strand, within H281DRAFT_04034 at 135.570 kb on + strand, within H281DRAFT_04034 at 135.571 kb on - strand, within H281DRAFT_04034 at 135.573 kb on + strand, within H281DRAFT_04034 at 135.573 kb on + strand, within H281DRAFT_04034 at 135.573 kb on + strand, within H281DRAFT_04034 at 135.574 kb on - strand, within H281DRAFT_04034 at 135.579 kb on - strand, within H281DRAFT_04034 at 135.591 kb on + strand, within H281DRAFT_04034 at 135.628 kb on + strand at 135.628 kb on + strand at 135.678 kb on + strand at 135.678 kb on + strand at 135.679 kb on - strand at 135.731 kb on - strand at 135.787 kb on - strand, within H281DRAFT_04035 at 135.799 kb on + strand, within H281DRAFT_04035 at 135.801 kb on + strand, within H281DRAFT_04035 at 135.871 kb on - strand, within H281DRAFT_04035 at 136.034 kb on - strand, within H281DRAFT_04035 at 136.034 kb on - strand, within H281DRAFT_04035 at 136.055 kb on - strand, within H281DRAFT_04035 at 136.111 kb on + strand at 136.112 kb on - strand at 136.112 kb on - strand at 136.117 kb on + strand at 136.117 kb on + strand at 136.118 kb on - strand at 136.122 kb on + strand at 136.131 kb on - strand at 136.131 kb on - strand at 136.135 kb on + strand at 136.136 kb on - strand at 136.157 kb on + strand at 136.158 kb on - strand at 136.168 kb on + strand at 136.169 kb on - strand at 136.175 kb on + strand at 136.176 kb on - strand at 136.196 kb on - strand at 136.202 kb on + strand at 136.203 kb on - strand at 136.203 kb on - strand at 136.203 kb on - strand at 136.203 kb on - strand at 136.268 kb on - strand at 136.268 kb on - strand at 136.322 kb on - strand at 136.343 kb on - strand at 136.371 kb on + strand at 136.519 kb on + strand at 136.519 kb on + strand at 136.519 kb on + strand at 136.519 kb on + strand at 136.520 kb on - strand at 136.520 kb on - strand at 137.152 kb on - strand, within H281DRAFT_04036 at 137.152 kb on - strand, within H281DRAFT_04036 at 137.214 kb on + strand, within H281DRAFT_04036 at 137.232 kb on + strand, within H281DRAFT_04036 at 137.319 kb on + strand at 137.320 kb on - strand at 137.386 kb on - strand at 137.410 kb on + strand at 138.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 135,542 - -0.4 135,562 + H281DRAFT_04034 0.14 -0.9 135,562 + H281DRAFT_04034 0.14 -1.4 135,562 + H281DRAFT_04034 0.14 -0.7 135,565 - H281DRAFT_04034 0.18 +0.4 135,565 - H281DRAFT_04034 0.18 -0.1 135,570 + H281DRAFT_04034 0.24 -0.9 135,571 - H281DRAFT_04034 0.26 -0.3 135,573 + H281DRAFT_04034 0.28 +0.3 135,573 + H281DRAFT_04034 0.28 -0.3 135,573 + H281DRAFT_04034 0.28 -0.5 135,574 - H281DRAFT_04034 0.30 +0.2 135,579 - H281DRAFT_04034 0.36 +0.5 135,591 + H281DRAFT_04034 0.53 -1.1 135,628 + -1.2 135,628 + -1.6 135,678 + -0.1 135,678 + +1.1 135,679 - -0.6 135,731 - +0.7 135,787 - H281DRAFT_04035 0.14 +0.0 135,799 + H281DRAFT_04035 0.17 -0.5 135,801 + H281DRAFT_04035 0.17 -0.3 135,871 - H281DRAFT_04035 0.36 -0.1 136,034 - H281DRAFT_04035 0.78 -0.2 136,034 - H281DRAFT_04035 0.78 -0.4 136,055 - H281DRAFT_04035 0.84 -0.1 136,111 + +0.1 136,112 - +0.1 136,112 - +0.1 136,117 + -0.3 136,117 + -0.3 136,118 - -0.4 136,122 + -0.2 136,131 - -1.0 136,131 - -1.0 136,135 + -0.6 136,136 - +0.5 136,157 + -0.4 136,158 - -0.0 136,168 + -0.0 136,169 - +0.4 136,175 + +0.3 136,176 - -0.7 136,196 - +0.1 136,202 + -0.5 136,203 - +0.3 136,203 - -0.0 136,203 - +0.2 136,203 - +0.0 136,268 - -1.2 136,268 - -0.5 136,322 - -0.5 136,343 - -0.0 136,371 + -1.3 136,519 + +0.9 136,519 + +0.2 136,519 + +0.5 136,519 + +0.5 136,520 - +0.2 136,520 - -0.8 137,152 - H281DRAFT_04036 0.78 +0.5 137,152 - H281DRAFT_04036 0.78 -0.7 137,214 + H281DRAFT_04036 0.86 -0.7 137,232 + H281DRAFT_04036 0.89 -0.9 137,319 + +0.1 137,320 - +0.2 137,386 - +0.4 137,410 + -0.7 138,321 + +1.8
Or see this region's nucleotide sequence