Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03948 and H281DRAFT_03949 are separated by 298 nucleotides H281DRAFT_03949 and H281DRAFT_03950 overlap by 47 nucleotides H281DRAFT_03950 and H281DRAFT_03951 are separated by 56 nucleotides
H281DRAFT_03948: H281DRAFT_03948 - metabolite-proton symporter, at 50,831 to 52,132
_03948
H281DRAFT_03949: H281DRAFT_03949 - Ribosomal protein S18 acetylase RimI, at 52,431 to 52,976
_03949
H281DRAFT_03950: H281DRAFT_03950 - hypothetical protein, at 52,930 to 53,124
_03950
H281DRAFT_03951: H281DRAFT_03951 - hypothetical protein, at 53,181 to 54,485
_03951
Position (kb) 52
53 Strain fitness (log2 ratio) -1
0
1
2 at 51.666 kb on + strand, within H281DRAFT_03948 at 51.666 kb on + strand, within H281DRAFT_03948 at 51.705 kb on + strand, within H281DRAFT_03948 at 51.705 kb on + strand, within H281DRAFT_03948 at 51.705 kb on + strand, within H281DRAFT_03948 at 51.705 kb on + strand, within H281DRAFT_03948 at 51.706 kb on - strand at 51.801 kb on + strand, within H281DRAFT_03948 at 51.891 kb on + strand, within H281DRAFT_03948 at 51.891 kb on + strand, within H281DRAFT_03948 at 51.892 kb on - strand, within H281DRAFT_03948 at 51.892 kb on - strand, within H281DRAFT_03948 at 51.945 kb on - strand, within H281DRAFT_03948 at 51.993 kb on + strand, within H281DRAFT_03948 at 52.017 kb on + strand at 52.021 kb on - strand at 52.041 kb on + strand at 52.111 kb on + strand at 52.284 kb on + strand at 52.366 kb on + strand at 52.377 kb on + strand at 52.500 kb on - strand, within H281DRAFT_03949 at 52.509 kb on - strand, within H281DRAFT_03949 at 52.681 kb on + strand, within H281DRAFT_03949 at 52.681 kb on + strand, within H281DRAFT_03949 at 52.681 kb on + strand, within H281DRAFT_03949 at 52.681 kb on + strand, within H281DRAFT_03949 at 52.682 kb on - strand, within H281DRAFT_03949 at 52.828 kb on - strand, within H281DRAFT_03949 at 52.828 kb on - strand, within H281DRAFT_03949 at 52.869 kb on + strand, within H281DRAFT_03949 at 52.870 kb on - strand, within H281DRAFT_03949 at 52.890 kb on + strand, within H281DRAFT_03949 at 52.890 kb on + strand, within H281DRAFT_03949 at 52.890 kb on + strand, within H281DRAFT_03949 at 52.890 kb on + strand, within H281DRAFT_03949 at 52.891 kb on - strand, within H281DRAFT_03949 at 52.891 kb on - strand, within H281DRAFT_03949 at 52.891 kb on - strand, within H281DRAFT_03949 at 52.944 kb on + strand at 52.945 kb on - strand at 53.161 kb on + strand at 53.161 kb on + strand at 53.162 kb on - strand at 53.234 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.327 kb on - strand, within H281DRAFT_03951 at 53.332 kb on + strand, within H281DRAFT_03951 at 53.333 kb on - strand, within H281DRAFT_03951 at 53.561 kb on + strand, within H281DRAFT_03951 at 53.858 kb on + strand, within H281DRAFT_03951 at 53.858 kb on + strand, within H281DRAFT_03951 at 53.875 kb on + strand, within H281DRAFT_03951 at 53.875 kb on + strand, within H281DRAFT_03951 at 53.875 kb on + strand, within H281DRAFT_03951 at 53.876 kb on - strand, within H281DRAFT_03951 at 53.876 kb on - strand, within H281DRAFT_03951
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 51,666 + H281DRAFT_03948 0.64 -0.4 51,666 + H281DRAFT_03948 0.64 -0.2 51,705 + H281DRAFT_03948 0.67 +2.0 51,705 + H281DRAFT_03948 0.67 -1.1 51,705 + H281DRAFT_03948 0.67 -0.2 51,705 + H281DRAFT_03948 0.67 -0.2 51,706 - -1.0 51,801 + H281DRAFT_03948 0.75 -0.2 51,891 + H281DRAFT_03948 0.81 +0.4 51,891 + H281DRAFT_03948 0.81 +0.5 51,892 - H281DRAFT_03948 0.81 +0.0 51,892 - H281DRAFT_03948 0.81 +0.5 51,945 - H281DRAFT_03948 0.86 +0.2 51,993 + H281DRAFT_03948 0.89 -0.7 52,017 + -0.6 52,021 - +0.1 52,041 + +0.5 52,111 + -0.2 52,284 + +0.5 52,366 + +0.0 52,377 + +0.0 52,500 - H281DRAFT_03949 0.13 -0.2 52,509 - H281DRAFT_03949 0.14 -0.2 52,681 + H281DRAFT_03949 0.46 +0.9 52,681 + H281DRAFT_03949 0.46 +0.5 52,681 + H281DRAFT_03949 0.46 -0.2 52,681 + H281DRAFT_03949 0.46 -0.4 52,682 - H281DRAFT_03949 0.46 +0.3 52,828 - H281DRAFT_03949 0.73 +0.4 52,828 - H281DRAFT_03949 0.73 -0.6 52,869 + H281DRAFT_03949 0.80 -0.7 52,870 - H281DRAFT_03949 0.80 -1.6 52,890 + H281DRAFT_03949 0.84 +0.8 52,890 + H281DRAFT_03949 0.84 +0.6 52,890 + H281DRAFT_03949 0.84 -1.1 52,890 + H281DRAFT_03949 0.84 -0.1 52,891 - H281DRAFT_03949 0.84 -0.6 52,891 - H281DRAFT_03949 0.84 +0.2 52,891 - H281DRAFT_03949 0.84 +0.4 52,944 + -0.6 52,945 - +1.2 53,161 + -0.2 53,161 + -0.1 53,162 - -1.6 53,234 - +0.4 53,264 - -0.5 53,264 - -0.1 53,327 - H281DRAFT_03951 0.11 +0.0 53,332 + H281DRAFT_03951 0.12 -0.5 53,333 - H281DRAFT_03951 0.12 +0.2 53,561 + H281DRAFT_03951 0.29 +0.3 53,858 + H281DRAFT_03951 0.52 +0.4 53,858 + H281DRAFT_03951 0.52 +0.1 53,875 + H281DRAFT_03951 0.53 +0.9 53,875 + H281DRAFT_03951 0.53 -0.6 53,875 + H281DRAFT_03951 0.53 +0.6 53,876 - H281DRAFT_03951 0.53 -0.2 53,876 - H281DRAFT_03951 0.53 +0.9
Or see this region's nucleotide sequence