Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03201

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03200 and H281DRAFT_03201 are separated by 95 nucleotidesH281DRAFT_03201 and H281DRAFT_03202 are separated by 325 nucleotidesH281DRAFT_03202 and H281DRAFT_03203 are separated by 50 nucleotides H281DRAFT_03200: H281DRAFT_03200 - hypothetical protein, at 249,100 to 250,428 _03200 H281DRAFT_03201: H281DRAFT_03201 - transcriptional regulator, XRE family, at 250,524 to 251,303 _03201 H281DRAFT_03202: H281DRAFT_03202 - SnoaL-like domain-containing protein, at 251,629 to 251,997 _03202 H281DRAFT_03203: H281DRAFT_03203 - hypothetical protein, at 252,048 to 252,356 _03203 Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1at 249.896 kb on + strand, within H281DRAFT_03200at 249.896 kb on + strand, within H281DRAFT_03200at 249.897 kb on - strand, within H281DRAFT_03200at 250.082 kb on - strand, within H281DRAFT_03200at 250.108 kb on - strand, within H281DRAFT_03200at 250.149 kb on - strand, within H281DRAFT_03200at 250.177 kb on + strand, within H281DRAFT_03200at 250.177 kb on + strand, within H281DRAFT_03200at 250.179 kb on + strand, within H281DRAFT_03200at 250.179 kb on + strand, within H281DRAFT_03200at 250.180 kb on - strand, within H281DRAFT_03200at 250.180 kb on - strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.182 kb on - strand, within H281DRAFT_03200at 250.182 kb on - strand, within H281DRAFT_03200at 250.182 kb on - strand, within H281DRAFT_03200at 250.220 kb on + strand, within H281DRAFT_03200at 250.221 kb on - strand, within H281DRAFT_03200at 250.305 kb on + strandat 250.423 kb on + strandat 250.430 kb on + strandat 250.438 kb on - strandat 250.661 kb on + strand, within H281DRAFT_03201at 251.001 kb on - strand, within H281DRAFT_03201at 251.418 kb on + strandat 251.418 kb on + strandat 251.439 kb on + strandat 251.439 kb on + strandat 251.440 kb on - strandat 251.477 kb on + strandat 251.513 kb on + strandat 251.513 kb on + strandat 251.525 kb on - strandat 251.543 kb on + strandat 252.021 kb on + strandat 252.022 kb on - strandat 252.163 kb on + strand, within H281DRAFT_03203at 252.164 kb on - strand, within H281DRAFT_03203

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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249,896 + H281DRAFT_03200 0.60 +0.5
249,896 + H281DRAFT_03200 0.60 -0.3
249,897 - H281DRAFT_03200 0.60 -0.4
250,082 - H281DRAFT_03200 0.74 -0.4
250,108 - H281DRAFT_03200 0.76 -0.3
250,149 - H281DRAFT_03200 0.79 -0.7
250,177 + H281DRAFT_03200 0.81 +0.2
250,177 + H281DRAFT_03200 0.81 -0.1
250,179 + H281DRAFT_03200 0.81 -0.3
250,179 + H281DRAFT_03200 0.81 +1.0
250,180 - H281DRAFT_03200 0.81 +0.7
250,180 - H281DRAFT_03200 0.81 -0.7
250,181 + H281DRAFT_03200 0.81 +0.6
250,181 + H281DRAFT_03200 0.81 +0.2
250,181 + H281DRAFT_03200 0.81 +0.8
250,181 + H281DRAFT_03200 0.81 -0.7
250,181 + H281DRAFT_03200 0.81 -0.9
250,182 - H281DRAFT_03200 0.81 -0.1
250,182 - H281DRAFT_03200 0.81 +0.3
250,182 - H281DRAFT_03200 0.81 -0.1
250,220 + H281DRAFT_03200 0.84 +0.0
250,221 - H281DRAFT_03200 0.84 -0.0
250,305 + +0.5
250,423 + +0.2
250,430 + +0.4
250,438 - +0.2
250,661 + H281DRAFT_03201 0.18 -0.0
251,001 - H281DRAFT_03201 0.61 -0.8
251,418 + -2.0
251,418 + +0.1
251,439 + +0.0
251,439 + +0.8
251,440 - -0.2
251,477 + +1.0
251,513 + +0.4
251,513 + +1.6
251,525 - +0.1
251,543 + -0.5
252,021 + -0.5
252,022 - +0.6
252,163 + H281DRAFT_03203 0.37 +0.0
252,164 - H281DRAFT_03203 0.38 -1.5

Or see this region's nucleotide sequence