Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03200

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03198 and H281DRAFT_03199 are separated by 13 nucleotidesH281DRAFT_03199 and H281DRAFT_03200 are separated by 527 nucleotidesH281DRAFT_03200 and H281DRAFT_03201 are separated by 95 nucleotides H281DRAFT_03198: H281DRAFT_03198 - flagellar transcriptional activator FlhC, at 247,669 to 248,238 _03198 H281DRAFT_03199: H281DRAFT_03199 - flagellar transcriptional activator FlhD, at 248,252 to 248,572 _03199 H281DRAFT_03200: H281DRAFT_03200 - hypothetical protein, at 249,100 to 250,428 _03200 H281DRAFT_03201: H281DRAFT_03201 - transcriptional regulator, XRE family, at 250,524 to 251,303 _03201 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1 2 3at 248.250 kb on + strandat 248.251 kb on - strandat 248.253 kb on + strandat 248.500 kb on + strand, within H281DRAFT_03199at 248.500 kb on + strand, within H281DRAFT_03199at 248.500 kb on + strand, within H281DRAFT_03199at 248.500 kb on + strand, within H281DRAFT_03199at 248.500 kb on + strand, within H281DRAFT_03199at 248.501 kb on - strand, within H281DRAFT_03199at 248.501 kb on - strand, within H281DRAFT_03199at 248.501 kb on - strand, within H281DRAFT_03199at 248.520 kb on + strand, within H281DRAFT_03199at 248.521 kb on - strand, within H281DRAFT_03199at 248.564 kb on - strandat 248.598 kb on + strandat 248.599 kb on - strandat 248.599 kb on - strandat 248.599 kb on - strandat 248.601 kb on + strandat 248.601 kb on + strandat 248.601 kb on + strandat 248.601 kb on + strandat 248.601 kb on + strandat 248.602 kb on - strandat 248.602 kb on - strandat 248.602 kb on - strandat 248.602 kb on - strandat 248.620 kb on + strandat 248.620 kb on + strandat 248.621 kb on - strandat 248.621 kb on - strandat 248.621 kb on - strandat 248.629 kb on + strandat 248.660 kb on - strandat 248.675 kb on + strandat 248.676 kb on - strandat 248.676 kb on - strandat 248.788 kb on + strandat 248.822 kb on + strandat 248.822 kb on + strandat 249.064 kb on - strandat 249.236 kb on + strand, within H281DRAFT_03200at 249.249 kb on + strand, within H281DRAFT_03200at 249.249 kb on + strandat 249.249 kb on + strand, within H281DRAFT_03200at 249.250 kb on - strand, within H281DRAFT_03200at 249.258 kb on - strand, within H281DRAFT_03200at 249.464 kb on + strand, within H281DRAFT_03200at 249.896 kb on + strand, within H281DRAFT_03200at 249.896 kb on + strand, within H281DRAFT_03200at 249.897 kb on - strand, within H281DRAFT_03200at 250.082 kb on - strand, within H281DRAFT_03200at 250.108 kb on - strand, within H281DRAFT_03200at 250.149 kb on - strand, within H281DRAFT_03200at 250.177 kb on + strand, within H281DRAFT_03200at 250.177 kb on + strand, within H281DRAFT_03200at 250.179 kb on + strand, within H281DRAFT_03200at 250.179 kb on + strand, within H281DRAFT_03200at 250.180 kb on - strand, within H281DRAFT_03200at 250.180 kb on - strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.181 kb on + strand, within H281DRAFT_03200at 250.182 kb on - strand, within H281DRAFT_03200at 250.182 kb on - strand, within H281DRAFT_03200at 250.182 kb on - strand, within H281DRAFT_03200at 250.220 kb on + strand, within H281DRAFT_03200at 250.221 kb on - strand, within H281DRAFT_03200at 250.305 kb on + strandat 250.423 kb on + strandat 250.430 kb on + strandat 250.438 kb on - strandat 250.661 kb on + strand, within H281DRAFT_03201at 251.001 kb on - strand, within H281DRAFT_03201at 251.418 kb on + strandat 251.418 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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248,250 + +0.3
248,251 - +1.2
248,253 + +1.0
248,500 + H281DRAFT_03199 0.77 +1.6
248,500 + H281DRAFT_03199 0.77 +1.2
248,500 + H281DRAFT_03199 0.77 +1.5
248,500 + H281DRAFT_03199 0.77 +1.0
248,500 + H281DRAFT_03199 0.77 +0.7
248,501 - H281DRAFT_03199 0.78 +1.4
248,501 - H281DRAFT_03199 0.78 +1.1
248,501 - H281DRAFT_03199 0.78 +1.7
248,520 + H281DRAFT_03199 0.83 +1.2
248,521 - H281DRAFT_03199 0.84 +0.9
248,564 - +1.2
248,598 + +1.1
248,599 - +0.6
248,599 - +0.3
248,599 - +1.1
248,601 + +1.5
248,601 + +0.6
248,601 + +0.8
248,601 + +1.1
248,601 + +0.3
248,602 - +1.4
248,602 - +0.5
248,602 - +1.0
248,602 - +1.1
248,620 + +1.0
248,620 + +0.6
248,621 - +1.2
248,621 - +1.1
248,621 - +0.8
248,629 + +0.3
248,660 - +0.9
248,675 + +1.3
248,676 - +0.6
248,676 - +0.8
248,788 + +0.7
248,822 + +0.5
248,822 + +0.5
249,064 - -0.8
249,236 + H281DRAFT_03200 0.10 +0.6
249,249 + H281DRAFT_03200 0.11 +0.8
249,249 + +3.0
249,249 + H281DRAFT_03200 0.11 +0.1
249,250 - H281DRAFT_03200 0.11 +0.3
249,258 - H281DRAFT_03200 0.12 +0.4
249,464 + H281DRAFT_03200 0.27 +0.3
249,896 + H281DRAFT_03200 0.60 +0.5
249,896 + H281DRAFT_03200 0.60 -0.3
249,897 - H281DRAFT_03200 0.60 -0.4
250,082 - H281DRAFT_03200 0.74 -0.4
250,108 - H281DRAFT_03200 0.76 -0.3
250,149 - H281DRAFT_03200 0.79 -0.7
250,177 + H281DRAFT_03200 0.81 +0.2
250,177 + H281DRAFT_03200 0.81 -0.1
250,179 + H281DRAFT_03200 0.81 -0.3
250,179 + H281DRAFT_03200 0.81 +1.0
250,180 - H281DRAFT_03200 0.81 +0.7
250,180 - H281DRAFT_03200 0.81 -0.7
250,181 + H281DRAFT_03200 0.81 +0.6
250,181 + H281DRAFT_03200 0.81 +0.2
250,181 + H281DRAFT_03200 0.81 +0.8
250,181 + H281DRAFT_03200 0.81 -0.7
250,181 + H281DRAFT_03200 0.81 -0.9
250,182 - H281DRAFT_03200 0.81 -0.1
250,182 - H281DRAFT_03200 0.81 +0.3
250,182 - H281DRAFT_03200 0.81 -0.1
250,220 + H281DRAFT_03200 0.84 +0.0
250,221 - H281DRAFT_03200 0.84 -0.0
250,305 + +0.5
250,423 + +0.2
250,430 + +0.4
250,438 - +0.2
250,661 + H281DRAFT_03201 0.18 -0.0
251,001 - H281DRAFT_03201 0.61 -0.8
251,418 + -2.0
251,418 + +0.1

Or see this region's nucleotide sequence