Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02256

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02253 and H281DRAFT_02254 are separated by 23 nucleotidesH281DRAFT_02254 and H281DRAFT_02255 are separated by 167 nucleotidesH281DRAFT_02255 and H281DRAFT_02256 are separated by 28 nucleotidesH281DRAFT_02256 and H281DRAFT_02257 are separated by 232 nucleotides H281DRAFT_02253: H281DRAFT_02253 - hypothetical protein, at 399,616 to 400,929 _02253 H281DRAFT_02254: H281DRAFT_02254 - hypothetical protein, at 400,953 to 401,117 _02254 H281DRAFT_02255: H281DRAFT_02255 - transcriptional regulator, XRE family, at 401,285 to 401,608 _02255 H281DRAFT_02256: H281DRAFT_02256 - Predicted Zn peptidase, at 401,637 to 402,470 _02256 H281DRAFT_02257: H281DRAFT_02257 - HNH endonuclease, at 402,703 to 404,058 _02257 Position (kb) 401 402 403Strain fitness (log2 ratio) -2 -1 0 1 2at 400.638 kb on + strand, within H281DRAFT_02253at 400.718 kb on + strand, within H281DRAFT_02253at 400.718 kb on + strand, within H281DRAFT_02253at 400.718 kb on + strand, within H281DRAFT_02253at 400.719 kb on - strand, within H281DRAFT_02253at 400.736 kb on + strand, within H281DRAFT_02253at 400.736 kb on + strand, within H281DRAFT_02253at 400.736 kb on + strand, within H281DRAFT_02253at 400.830 kb on - strandat 400.839 kb on + strandat 400.840 kb on - strandat 400.840 kb on - strandat 400.840 kb on - strandat 400.840 kb on - strandat 400.905 kb on + strandat 400.906 kb on - strandat 400.908 kb on + strandat 400.908 kb on + strandat 400.908 kb on + strandat 400.908 kb on + strandat 400.908 kb on + strandat 400.909 kb on - strandat 400.909 kb on - strandat 400.909 kb on - strandat 400.909 kb on - strandat 400.923 kb on + strandat 400.924 kb on - strandat 400.924 kb on - strandat 400.955 kb on - strandat 400.961 kb on + strandat 400.961 kb on + strandat 400.961 kb on + strandat 400.961 kb on + strandat 400.962 kb on - strandat 400.962 kb on - strandat 400.962 kb on - strandat 400.988 kb on - strand, within H281DRAFT_02254at 400.988 kb on - strand, within H281DRAFT_02254at 401.060 kb on + strandat 401.061 kb on - strand, within H281DRAFT_02254at 401.228 kb on + strandat 401.296 kb on - strandat 401.296 kb on - strandat 401.296 kb on - strandat 401.398 kb on + strand, within H281DRAFT_02255at 401.469 kb on - strand, within H281DRAFT_02255at 401.469 kb on - strand, within H281DRAFT_02255at 401.534 kb on + strand, within H281DRAFT_02255at 401.534 kb on + strand, within H281DRAFT_02255at 401.534 kb on + strand, within H281DRAFT_02255at 401.535 kb on - strand, within H281DRAFT_02255at 401.535 kb on - strand, within H281DRAFT_02255at 401.535 kb on - strand, within H281DRAFT_02255at 401.558 kb on - strand, within H281DRAFT_02255at 401.618 kb on - strandat 401.665 kb on + strandat 401.665 kb on + strandat 401.665 kb on + strandat 401.665 kb on + strandat 401.666 kb on - strandat 401.755 kb on + strand, within H281DRAFT_02256at 401.889 kb on + strand, within H281DRAFT_02256at 401.889 kb on + strand, within H281DRAFT_02256at 401.889 kb on + strand, within H281DRAFT_02256at 401.889 kb on + strand, within H281DRAFT_02256at 401.889 kb on + strand, within H281DRAFT_02256at 401.994 kb on + strand, within H281DRAFT_02256at 402.031 kb on + strand, within H281DRAFT_02256at 402.031 kb on + strand, within H281DRAFT_02256at 402.032 kb on - strand, within H281DRAFT_02256at 402.089 kb on - strand, within H281DRAFT_02256at 402.188 kb on + strand, within H281DRAFT_02256at 402.188 kb on + strand, within H281DRAFT_02256at 402.189 kb on - strand, within H281DRAFT_02256at 402.233 kb on - strand, within H281DRAFT_02256at 402.257 kb on + strand, within H281DRAFT_02256at 402.258 kb on - strand, within H281DRAFT_02256at 402.490 kb on - strandat 402.490 kb on - strandat 402.638 kb on + strandat 402.638 kb on + strandat 402.639 kb on - strandat 402.639 kb on - strandat 402.639 kb on - strandat 402.641 kb on + strandat 402.641 kb on + strandat 402.641 kb on + strandat 402.642 kb on - strandat 402.642 kb on - strandat 402.674 kb on + strandat 402.674 kb on + strandat 402.674 kb on + strandat 402.688 kb on - strandat 402.688 kb on - strandat 402.729 kb on + strandat 402.729 kb on + strandat 402.729 kb on + strandat 402.730 kb on - strandat 402.730 kb on - strandat 402.730 kb on - strandat 402.743 kb on + strandat 402.743 kb on + strandat 402.744 kb on - strandat 402.779 kb on - strandat 402.877 kb on + strand, within H281DRAFT_02257at 402.877 kb on + strand, within H281DRAFT_02257at 402.877 kb on + strand, within H281DRAFT_02257at 402.877 kb on + strand, within H281DRAFT_02257at 402.878 kb on - strand, within H281DRAFT_02257at 402.887 kb on - strand, within H281DRAFT_02257at 402.947 kb on - strand, within H281DRAFT_02257at 402.973 kb on + strand, within H281DRAFT_02257at 402.973 kb on + strand, within H281DRAFT_02257at 402.973 kb on + strand, within H281DRAFT_02257at 402.973 kb on + strand, within H281DRAFT_02257at 402.973 kb on + strand, within H281DRAFT_02257at 402.973 kb on + strand, within H281DRAFT_02257at 402.973 kb on + strand, within H281DRAFT_02257at 402.974 kb on - strand, within H281DRAFT_02257at 402.974 kb on - strand, within H281DRAFT_02257at 402.974 kb on - strand, within H281DRAFT_02257at 402.974 kb on - strand, within H281DRAFT_02257at 402.975 kb on + strand, within H281DRAFT_02257at 402.975 kb on + strand, within H281DRAFT_02257at 402.975 kb on + strand, within H281DRAFT_02257at 402.975 kb on + strand, within H281DRAFT_02257at 402.975 kb on + strand, within H281DRAFT_02257at 402.975 kb on + strand, within H281DRAFT_02257at 402.975 kb on + strand, within H281DRAFT_02257at 402.976 kb on - strandat 402.976 kb on - strand, within H281DRAFT_02257at 402.976 kb on - strand, within H281DRAFT_02257at 402.976 kb on - strand, within H281DRAFT_02257at 402.976 kb on - strand, within H281DRAFT_02257at 402.976 kb on - strand, within H281DRAFT_02257at 402.976 kb on - strand, within H281DRAFT_02257at 403.034 kb on + strand, within H281DRAFT_02257at 403.034 kb on + strand, within H281DRAFT_02257at 403.034 kb on + strand, within H281DRAFT_02257at 403.034 kb on + strand, within H281DRAFT_02257at 403.035 kb on - strand, within H281DRAFT_02257at 403.035 kb on - strand, within H281DRAFT_02257at 403.035 kb on - strand, within H281DRAFT_02257at 403.035 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.115 kb on + strand, within H281DRAFT_02257at 403.115 kb on + strand, within H281DRAFT_02257at 403.115 kb on + strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.144 kb on + strand, within H281DRAFT_02257at 403.144 kb on + strand, within H281DRAFT_02257at 403.145 kb on - strand, within H281DRAFT_02257at 403.212 kb on - strand, within H281DRAFT_02257at 403.283 kb on - strand, within H281DRAFT_02257at 403.283 kb on - strand, within H281DRAFT_02257at 403.283 kb on - strand, within H281DRAFT_02257at 403.283 kb on - strand, within H281DRAFT_02257at 403.325 kb on + strand, within H281DRAFT_02257at 403.339 kb on + strand, within H281DRAFT_02257at 403.340 kb on - strand, within H281DRAFT_02257at 403.340 kb on - strand, within H281DRAFT_02257at 403.343 kb on + strand, within H281DRAFT_02257at 403.344 kb on - strand, within H281DRAFT_02257at 403.344 kb on - strand, within H281DRAFT_02257at 403.344 kb on - strand, within H281DRAFT_02257at 403.344 kb on - strand, within H281DRAFT_02257at 403.375 kb on + strand, within H281DRAFT_02257at 403.376 kb on - strand, within H281DRAFT_02257at 403.434 kb on + strand, within H281DRAFT_02257at 403.435 kb on - strand, within H281DRAFT_02257at 403.435 kb on - strand, within H281DRAFT_02257at 403.443 kb on + strand, within H281DRAFT_02257at 403.444 kb on - strand, within H281DRAFT_02257

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
400,638 + H281DRAFT_02253 0.78 -0.1
400,718 + H281DRAFT_02253 0.84 +0.1
400,718 + H281DRAFT_02253 0.84 -0.6
400,718 + H281DRAFT_02253 0.84 -0.1
400,719 - H281DRAFT_02253 0.84 -0.6
400,736 + H281DRAFT_02253 0.85 -1.8
400,736 + H281DRAFT_02253 0.85 -0.0
400,736 + H281DRAFT_02253 0.85 -0.3
400,830 - -0.1
400,839 + -0.2
400,840 - -0.0
400,840 - +0.6
400,840 - +0.6
400,840 - -0.1
400,905 + -0.1
400,906 - +0.0
400,908 + +0.0
400,908 + +1.0
400,908 + +0.2
400,908 + +0.4
400,908 + +0.6
400,909 - +0.2
400,909 - -0.2
400,909 - -0.3
400,909 - +0.0
400,923 + +0.1
400,924 - +0.2
400,924 - -0.8
400,955 - +0.1
400,961 + +0.4
400,961 + +0.4
400,961 + -0.4
400,961 + +0.5
400,962 - +0.0
400,962 - +0.0
400,962 - +0.1
400,988 - H281DRAFT_02254 0.21 -0.4
400,988 - H281DRAFT_02254 0.21 +0.0
401,060 + +0.6
401,061 - H281DRAFT_02254 0.65 +0.2
401,228 + -0.1
401,296 - +0.1
401,296 - -0.2
401,296 - -0.6
401,398 + H281DRAFT_02255 0.35 -2.0
401,469 - H281DRAFT_02255 0.57 -1.1
401,469 - H281DRAFT_02255 0.57 -0.9
401,534 + H281DRAFT_02255 0.77 -0.9
401,534 + H281DRAFT_02255 0.77 -0.3
401,534 + H281DRAFT_02255 0.77 +0.2
401,535 - H281DRAFT_02255 0.77 -0.4
401,535 - H281DRAFT_02255 0.77 -0.3
401,535 - H281DRAFT_02255 0.77 -2.4
401,558 - H281DRAFT_02255 0.84 -0.6
401,618 - -0.1
401,665 + +0.1
401,665 + -1.7
401,665 + -0.9
401,665 + +0.4
401,666 - -0.4
401,755 + H281DRAFT_02256 0.14 -1.6
401,889 + H281DRAFT_02256 0.30 -0.3
401,889 + H281DRAFT_02256 0.30 +0.1
401,889 + H281DRAFT_02256 0.30 +0.2
401,889 + H281DRAFT_02256 0.30 -0.2
401,889 + H281DRAFT_02256 0.30 +0.2
401,994 + H281DRAFT_02256 0.43 -0.5
402,031 + H281DRAFT_02256 0.47 +0.1
402,031 + H281DRAFT_02256 0.47 -0.6
402,032 - H281DRAFT_02256 0.47 -0.1
402,089 - H281DRAFT_02256 0.54 -0.2
402,188 + H281DRAFT_02256 0.66 -0.4
402,188 + H281DRAFT_02256 0.66 -0.6
402,189 - H281DRAFT_02256 0.66 +0.1
402,233 - H281DRAFT_02256 0.71 -0.1
402,257 + H281DRAFT_02256 0.74 -0.2
402,258 - H281DRAFT_02256 0.74 +0.2
402,490 - -0.2
402,490 - +0.4
402,638 + -0.2
402,638 + -0.4
402,639 - -0.9
402,639 - +0.1
402,639 - -0.1
402,641 + +1.4
402,641 + +0.1
402,641 + -0.4
402,642 - +0.4
402,642 - +0.1
402,674 + +0.4
402,674 + -0.1
402,674 + +1.3
402,688 - -0.7
402,688 - -0.3
402,729 + -0.7
402,729 + -0.3
402,729 + +0.1
402,730 - -0.4
402,730 - -0.3
402,730 - -0.4
402,743 + +0.4
402,743 + +0.3
402,744 - -0.7
402,779 - -0.2
402,877 + H281DRAFT_02257 0.13 -1.2
402,877 + H281DRAFT_02257 0.13 -1.1
402,877 + H281DRAFT_02257 0.13 -0.8
402,877 + H281DRAFT_02257 0.13 -0.1
402,878 - H281DRAFT_02257 0.13 +0.3
402,887 - H281DRAFT_02257 0.14 -0.1
402,947 - H281DRAFT_02257 0.18 -0.1
402,973 + H281DRAFT_02257 0.20 -0.1
402,973 + H281DRAFT_02257 0.20 -0.2
402,973 + H281DRAFT_02257 0.20 +0.1
402,973 + H281DRAFT_02257 0.20 -0.2
402,973 + H281DRAFT_02257 0.20 +0.3
402,973 + H281DRAFT_02257 0.20 -0.3
402,973 + H281DRAFT_02257 0.20 -0.2
402,974 - H281DRAFT_02257 0.20 -0.3
402,974 - H281DRAFT_02257 0.20 -0.1
402,974 - H281DRAFT_02257 0.20 +0.4
402,974 - H281DRAFT_02257 0.20 -0.7
402,975 + H281DRAFT_02257 0.20 +0.7
402,975 + H281DRAFT_02257 0.20 +0.2
402,975 + H281DRAFT_02257 0.20 -1.0
402,975 + H281DRAFT_02257 0.20 +0.0
402,975 + H281DRAFT_02257 0.20 -0.3
402,975 + H281DRAFT_02257 0.20 -0.2
402,975 + H281DRAFT_02257 0.20 -0.1
402,976 - +2.5
402,976 - H281DRAFT_02257 0.20 +0.2
402,976 - H281DRAFT_02257 0.20 -1.3
402,976 - H281DRAFT_02257 0.20 -1.2
402,976 - H281DRAFT_02257 0.20 +0.3
402,976 - H281DRAFT_02257 0.20 -0.4
402,976 - H281DRAFT_02257 0.20 +0.3
403,034 + H281DRAFT_02257 0.24 -0.4
403,034 + H281DRAFT_02257 0.24 +0.4
403,034 + H281DRAFT_02257 0.24 -0.5
403,034 + H281DRAFT_02257 0.24 +0.1
403,035 - H281DRAFT_02257 0.24 -0.5
403,035 - H281DRAFT_02257 0.24 +0.0
403,035 - H281DRAFT_02257 0.24 -1.6
403,035 - H281DRAFT_02257 0.24 -0.9
403,114 - H281DRAFT_02257 0.30 -0.2
403,114 - H281DRAFT_02257 0.30 -0.8
403,114 - H281DRAFT_02257 0.30 -0.4
403,114 - H281DRAFT_02257 0.30 -1.2
403,114 - H281DRAFT_02257 0.30 -1.1
403,115 + H281DRAFT_02257 0.30 -1.0
403,115 + H281DRAFT_02257 0.30 -0.5
403,115 + H281DRAFT_02257 0.30 -1.6
403,116 - H281DRAFT_02257 0.30 -0.4
403,116 - H281DRAFT_02257 0.30 +0.1
403,116 - H281DRAFT_02257 0.30 +0.1
403,116 - H281DRAFT_02257 0.30 -0.1
403,116 - H281DRAFT_02257 0.30 +0.2
403,116 - H281DRAFT_02257 0.30 +0.0
403,144 + H281DRAFT_02257 0.33 +0.1
403,144 + H281DRAFT_02257 0.33 -0.6
403,145 - H281DRAFT_02257 0.33 +0.2
403,212 - H281DRAFT_02257 0.38 -1.4
403,283 - H281DRAFT_02257 0.43 +0.3
403,283 - H281DRAFT_02257 0.43 -0.8
403,283 - H281DRAFT_02257 0.43 -0.1
403,283 - H281DRAFT_02257 0.43 +0.4
403,325 + H281DRAFT_02257 0.46 -0.1
403,339 + H281DRAFT_02257 0.47 +0.5
403,340 - H281DRAFT_02257 0.47 -0.1
403,340 - H281DRAFT_02257 0.47 +0.3
403,343 + H281DRAFT_02257 0.47 +0.1
403,344 - H281DRAFT_02257 0.47 -0.4
403,344 - H281DRAFT_02257 0.47 +0.1
403,344 - H281DRAFT_02257 0.47 +0.2
403,344 - H281DRAFT_02257 0.47 -0.9
403,375 + H281DRAFT_02257 0.50 -0.2
403,376 - H281DRAFT_02257 0.50 +0.9
403,434 + H281DRAFT_02257 0.54 +0.2
403,435 - H281DRAFT_02257 0.54 +0.4
403,435 - H281DRAFT_02257 0.54 -0.1
403,443 + H281DRAFT_02257 0.55 -0.4
403,444 - H281DRAFT_02257 0.55 -0.2

Or see this region's nucleotide sequence