Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02233 and H281DRAFT_02234 are separated by 95 nucleotides H281DRAFT_02234 and H281DRAFT_02235 are separated by 0 nucleotides H281DRAFT_02235 and H281DRAFT_02236 overlap by 11 nucleotides H281DRAFT_02236 and H281DRAFT_02237 overlap by 4 nucleotides
H281DRAFT_02233: H281DRAFT_02233 - tRNA_Phe_GAA, at 377,737 to 377,812
_02233
H281DRAFT_02234: H281DRAFT_02234 - two component transcriptional regulator, Fis family, at 377,908 to 378,600
_02234
H281DRAFT_02235: H281DRAFT_02235 - multi-sensor signal transduction histidine kinase, at 378,601 to 381,015
_02235
H281DRAFT_02236: H281DRAFT_02236 - protein of unknown function (DUF4390), at 381,005 to 381,604
_02236
H281DRAFT_02237: H281DRAFT_02237 - 16S rRNA (cytosine967-C5)-methyltransferase, at 381,601 to 383,040
_02237
Position (kb) 378
379
380
381
382 Strain fitness (log2 ratio) -2
-1
0
1 at 377.614 kb on + strand at 377.653 kb on + strand at 377.653 kb on + strand at 377.654 kb on - strand at 377.656 kb on + strand at 377.657 kb on - strand at 377.657 kb on - strand at 378.649 kb on - strand at 379.133 kb on + strand, within H281DRAFT_02235 at 379.133 kb on + strand, within H281DRAFT_02235 at 379.811 kb on + strand, within H281DRAFT_02235 at 379.949 kb on + strand, within H281DRAFT_02235 at 380.084 kb on + strand, within H281DRAFT_02235 at 380.084 kb on + strand, within H281DRAFT_02235 at 380.084 kb on + strand, within H281DRAFT_02235 at 380.084 kb on + strand, within H281DRAFT_02235 at 380.364 kb on + strand, within H281DRAFT_02235 at 380.393 kb on + strand, within H281DRAFT_02235 at 380.699 kb on + strand, within H281DRAFT_02235 at 380.873 kb on + strand at 380.873 kb on + strand at 381.007 kb on - strand at 381.010 kb on + strand at 381.010 kb on + strand at 381.011 kb on - strand at 381.029 kb on - strand at 381.144 kb on + strand, within H281DRAFT_02236 at 381.403 kb on + strand, within H281DRAFT_02236 at 381.727 kb on + strand at 381.728 kb on - strand at 381.728 kb on - strand at 381.825 kb on + strand, within H281DRAFT_02237 at 381.826 kb on - strand, within H281DRAFT_02237 at 381.826 kb on - strand, within H281DRAFT_02237 at 381.830 kb on + strand, within H281DRAFT_02237 at 381.831 kb on - strand, within H281DRAFT_02237
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 377,614 + -1.2 377,653 + +0.9 377,653 + +0.6 377,654 - +0.0 377,656 + -0.5 377,657 - +0.7 377,657 - +0.0 378,649 - -0.1 379,133 + H281DRAFT_02235 0.22 +0.5 379,133 + H281DRAFT_02235 0.22 -2.5 379,811 + H281DRAFT_02235 0.50 +0.8 379,949 + H281DRAFT_02235 0.56 +0.1 380,084 + H281DRAFT_02235 0.61 -0.2 380,084 + H281DRAFT_02235 0.61 +1.6 380,084 + H281DRAFT_02235 0.61 -0.3 380,084 + H281DRAFT_02235 0.61 -1.1 380,364 + H281DRAFT_02235 0.73 +0.8 380,393 + H281DRAFT_02235 0.74 -0.3 380,699 + H281DRAFT_02235 0.87 +0.9 380,873 + -0.2 380,873 + +1.1 381,007 - +0.4 381,010 + +0.8 381,010 + +0.0 381,011 - +0.6 381,029 - -0.1 381,144 + H281DRAFT_02236 0.23 -0.1 381,403 + H281DRAFT_02236 0.66 +1.6 381,727 + -0.5 381,728 - -1.0 381,728 - -0.6 381,825 + H281DRAFT_02237 0.16 -0.9 381,826 - H281DRAFT_02237 0.16 -0.7 381,826 - H281DRAFT_02237 0.16 -0.8 381,830 + H281DRAFT_02237 0.16 +0.6 381,831 - H281DRAFT_02237 0.16 -0.7
Or see this region's nucleotide sequence