Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02034

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02033 and H281DRAFT_02034 are separated by 76 nucleotidesH281DRAFT_02034 and H281DRAFT_02035 are separated by 331 nucleotides H281DRAFT_02033: H281DRAFT_02033 - Site-specific recombinase XerD, at 154,623 to 155,819 _02033 H281DRAFT_02034: H281DRAFT_02034 - Predicted ATPase with chaperone activity, at 155,896 to 156,495 _02034 H281DRAFT_02035: H281DRAFT_02035 - hypothetical protein, at 156,827 to 157,534 _02035 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2at 154.968 kb on + strand, within H281DRAFT_02033at 154.968 kb on + strand, within H281DRAFT_02033at 154.968 kb on + strand, within H281DRAFT_02033at 154.969 kb on - strand, within H281DRAFT_02033at 154.971 kb on + strand, within H281DRAFT_02033at 154.971 kb on + strand, within H281DRAFT_02033at 154.971 kb on + strand, within H281DRAFT_02033at 154.971 kb on + strand, within H281DRAFT_02033at 154.972 kb on - strandat 154.972 kb on - strand, within H281DRAFT_02033at 154.972 kb on - strand, within H281DRAFT_02033at 154.975 kb on + strand, within H281DRAFT_02033at 154.975 kb on + strandat 154.975 kb on + strand, within H281DRAFT_02033at 154.975 kb on + strand, within H281DRAFT_02033at 154.975 kb on + strand, within H281DRAFT_02033at 154.976 kb on - strand, within H281DRAFT_02033at 154.976 kb on - strand, within H281DRAFT_02033at 154.976 kb on - strand, within H281DRAFT_02033at 155.044 kb on - strand, within H281DRAFT_02033at 155.044 kb on - strand, within H281DRAFT_02033at 155.091 kb on - strand, within H281DRAFT_02033at 155.106 kb on + strand, within H281DRAFT_02033at 155.107 kb on - strand, within H281DRAFT_02033at 155.160 kb on + strand, within H281DRAFT_02033at 155.161 kb on - strand, within H281DRAFT_02033at 155.161 kb on - strand, within H281DRAFT_02033at 155.173 kb on + strand, within H281DRAFT_02033at 155.174 kb on - strand, within H281DRAFT_02033at 155.301 kb on - strand, within H281DRAFT_02033at 155.304 kb on - strand, within H281DRAFT_02033at 155.304 kb on - strand, within H281DRAFT_02033at 155.333 kb on + strand, within H281DRAFT_02033at 155.334 kb on - strand, within H281DRAFT_02033at 155.334 kb on - strand, within H281DRAFT_02033at 155.341 kb on + strand, within H281DRAFT_02033at 155.341 kb on + strand, within H281DRAFT_02033at 155.364 kb on + strand, within H281DRAFT_02033at 155.365 kb on - strand, within H281DRAFT_02033at 155.483 kb on + strand, within H281DRAFT_02033at 155.483 kb on + strand, within H281DRAFT_02033at 155.484 kb on - strand, within H281DRAFT_02033at 155.484 kb on - strand, within H281DRAFT_02033at 155.485 kb on + strand, within H281DRAFT_02033at 155.485 kb on + strand, within H281DRAFT_02033at 155.485 kb on + strand, within H281DRAFT_02033at 155.485 kb on + strand, within H281DRAFT_02033at 155.485 kb on + strand, within H281DRAFT_02033at 155.486 kb on - strand, within H281DRAFT_02033at 155.486 kb on - strand, within H281DRAFT_02033at 155.486 kb on - strand, within H281DRAFT_02033at 155.486 kb on - strand, within H281DRAFT_02033at 155.486 kb on - strand, within H281DRAFT_02033at 155.486 kb on - strand, within H281DRAFT_02033at 155.487 kb on + strand, within H281DRAFT_02033at 155.487 kb on + strand, within H281DRAFT_02033at 155.487 kb on + strand, within H281DRAFT_02033at 155.487 kb on + strand, within H281DRAFT_02033at 155.487 kb on + strand, within H281DRAFT_02033at 155.487 kb on + strand, within H281DRAFT_02033at 155.488 kb on - strand, within H281DRAFT_02033at 155.524 kb on - strand, within H281DRAFT_02033at 155.572 kb on + strand, within H281DRAFT_02033at 155.572 kb on + strand, within H281DRAFT_02033at 155.573 kb on - strand, within H281DRAFT_02033at 155.573 kb on - strand, within H281DRAFT_02033at 155.581 kb on - strand, within H281DRAFT_02033at 155.596 kb on - strand, within H281DRAFT_02033at 155.629 kb on + strand, within H281DRAFT_02033at 155.629 kb on + strand, within H281DRAFT_02033at 155.629 kb on + strand, within H281DRAFT_02033at 155.630 kb on - strand, within H281DRAFT_02033at 155.647 kb on - strand, within H281DRAFT_02033at 155.771 kb on + strandat 155.787 kb on + strandat 155.787 kb on + strandat 155.787 kb on + strandat 155.787 kb on + strandat 155.788 kb on - strandat 155.820 kb on - strandat 155.820 kb on - strandat 155.842 kb on - strandat 155.845 kb on + strandat 155.845 kb on + strandat 155.845 kb on + strandat 155.845 kb on + strandat 155.846 kb on - strandat 155.846 kb on - strandat 155.846 kb on - strandat 155.846 kb on - strandat 155.846 kb on - strandat 155.846 kb on - strandat 155.846 kb on - strandat 155.847 kb on + strandat 155.848 kb on - strandat 155.848 kb on - strandat 155.888 kb on + strandat 155.888 kb on + strandat 155.889 kb on - strandat 155.889 kb on - strandat 155.894 kb on + strandat 155.894 kb on + strandat 155.895 kb on - strandat 155.895 kb on - strandat 156.094 kb on + strand, within H281DRAFT_02034at 156.335 kb on + strand, within H281DRAFT_02034at 156.379 kb on + strand, within H281DRAFT_02034at 156.379 kb on + strand, within H281DRAFT_02034at 156.379 kb on + strand, within H281DRAFT_02034at 156.379 kb on + strand, within H281DRAFT_02034at 156.379 kb on + strand, within H281DRAFT_02034at 156.383 kb on - strand, within H281DRAFT_02034at 156.505 kb on + strandat 156.525 kb on + strandat 156.549 kb on - strandat 156.572 kb on - strandat 156.575 kb on + strandat 156.575 kb on + strandat 156.575 kb on + strandat 156.575 kb on + strandat 156.575 kb on + strandat 156.575 kb on + strandat 156.576 kb on - strandat 156.576 kb on - strandat 156.576 kb on - strandat 156.576 kb on - strandat 156.576 kb on - strandat 156.576 kb on - strandat 156.720 kb on + strandat 156.740 kb on - strandat 156.751 kb on + strandat 156.752 kb on - strandat 156.832 kb on - strandat 156.906 kb on + strand, within H281DRAFT_02035at 156.906 kb on + strand, within H281DRAFT_02035at 156.906 kb on + strand, within H281DRAFT_02035at 156.907 kb on - strand, within H281DRAFT_02035at 156.907 kb on - strand, within H281DRAFT_02035at 156.907 kb on - strand, within H281DRAFT_02035at 156.907 kb on - strand, within H281DRAFT_02035at 156.939 kb on + strand, within H281DRAFT_02035at 157.152 kb on - strand, within H281DRAFT_02035at 157.205 kb on + strand, within H281DRAFT_02035at 157.205 kb on + strand, within H281DRAFT_02035at 157.206 kb on - strand, within H281DRAFT_02035at 157.206 kb on - strand, within H281DRAFT_02035at 157.206 kb on - strand, within H281DRAFT_02035at 157.206 kb on - strand, within H281DRAFT_02035at 157.211 kb on + strandat 157.270 kb on + strand, within H281DRAFT_02035at 157.399 kb on + strand, within H281DRAFT_02035at 157.400 kb on - strand, within H281DRAFT_02035at 157.400 kb on - strand, within H281DRAFT_02035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
154,968 + H281DRAFT_02033 0.29 -0.3
154,968 + H281DRAFT_02033 0.29 +2.0
154,968 + H281DRAFT_02033 0.29 +0.4
154,969 - H281DRAFT_02033 0.29 +1.7
154,971 + H281DRAFT_02033 0.29 +0.6
154,971 + H281DRAFT_02033 0.29 +0.3
154,971 + H281DRAFT_02033 0.29 -0.9
154,971 + H281DRAFT_02033 0.29 -0.3
154,972 - -0.6
154,972 - H281DRAFT_02033 0.29 -0.3
154,972 - H281DRAFT_02033 0.29 -0.9
154,975 + H281DRAFT_02033 0.29 -0.3
154,975 + -0.0
154,975 + H281DRAFT_02033 0.29 -0.2
154,975 + H281DRAFT_02033 0.29 +0.4
154,975 + H281DRAFT_02033 0.29 +0.0
154,976 - H281DRAFT_02033 0.29 +0.0
154,976 - H281DRAFT_02033 0.29 -0.0
154,976 - H281DRAFT_02033 0.29 -0.0
155,044 - H281DRAFT_02033 0.35 -1.3
155,044 - H281DRAFT_02033 0.35 -0.6
155,091 - H281DRAFT_02033 0.39 +0.3
155,106 + H281DRAFT_02033 0.40 +0.2
155,107 - H281DRAFT_02033 0.40 +0.6
155,160 + H281DRAFT_02033 0.45 +0.4
155,161 - H281DRAFT_02033 0.45 +1.0
155,161 - H281DRAFT_02033 0.45 -0.5
155,173 + H281DRAFT_02033 0.46 -0.0
155,174 - H281DRAFT_02033 0.46 -0.2
155,301 - H281DRAFT_02033 0.57 +1.1
155,304 - H281DRAFT_02033 0.57 +0.4
155,304 - H281DRAFT_02033 0.57 -0.7
155,333 + H281DRAFT_02033 0.59 -0.6
155,334 - H281DRAFT_02033 0.59 -0.1
155,334 - H281DRAFT_02033 0.59 -0.9
155,341 + H281DRAFT_02033 0.60 +0.2
155,341 + H281DRAFT_02033 0.60 -0.7
155,364 + H281DRAFT_02033 0.62 -0.0
155,365 - H281DRAFT_02033 0.62 +0.1
155,483 + H281DRAFT_02033 0.72 +0.3
155,483 + H281DRAFT_02033 0.72 -0.3
155,484 - H281DRAFT_02033 0.72 +0.5
155,484 - H281DRAFT_02033 0.72 -0.0
155,485 + H281DRAFT_02033 0.72 +0.1
155,485 + H281DRAFT_02033 0.72 +1.4
155,485 + H281DRAFT_02033 0.72 -0.0
155,485 + H281DRAFT_02033 0.72 -0.1
155,485 + H281DRAFT_02033 0.72 -0.4
155,486 - H281DRAFT_02033 0.72 -0.2
155,486 - H281DRAFT_02033 0.72 +0.3
155,486 - H281DRAFT_02033 0.72 +0.0
155,486 - H281DRAFT_02033 0.72 -0.1
155,486 - H281DRAFT_02033 0.72 -0.6
155,486 - H281DRAFT_02033 0.72 +0.5
155,487 + H281DRAFT_02033 0.72 +0.6
155,487 + H281DRAFT_02033 0.72 -0.3
155,487 + H281DRAFT_02033 0.72 -0.1
155,487 + H281DRAFT_02033 0.72 +0.2
155,487 + H281DRAFT_02033 0.72 -0.9
155,487 + H281DRAFT_02033 0.72 +0.1
155,488 - H281DRAFT_02033 0.72 -0.5
155,524 - H281DRAFT_02033 0.75 +0.4
155,572 + H281DRAFT_02033 0.79 -0.0
155,572 + H281DRAFT_02033 0.79 -0.2
155,573 - H281DRAFT_02033 0.79 -0.8
155,573 - H281DRAFT_02033 0.79 +1.3
155,581 - H281DRAFT_02033 0.80 +0.1
155,596 - H281DRAFT_02033 0.81 +1.0
155,629 + H281DRAFT_02033 0.84 +0.3
155,629 + H281DRAFT_02033 0.84 -0.6
155,629 + H281DRAFT_02033 0.84 +0.3
155,630 - H281DRAFT_02033 0.84 -0.2
155,647 - H281DRAFT_02033 0.86 +0.4
155,771 + +0.5
155,787 + +0.4
155,787 + +0.3
155,787 + -0.1
155,787 + +0.7
155,788 - +0.4
155,820 - -0.0
155,820 - -0.2
155,842 - +0.3
155,845 + -0.2
155,845 + -0.3
155,845 + -0.1
155,845 + -0.6
155,846 - -0.0
155,846 - -0.5
155,846 - -0.1
155,846 - +0.0
155,846 - +0.1
155,846 - -0.2
155,846 - +0.3
155,847 + +0.8
155,848 - -0.1
155,848 - -0.2
155,888 + +0.4
155,888 + +0.3
155,889 - +0.1
155,889 - -0.0
155,894 + +0.7
155,894 + -0.3
155,895 - +1.2
155,895 - -0.4
156,094 + H281DRAFT_02034 0.33 +0.0
156,335 + H281DRAFT_02034 0.73 +0.6
156,379 + H281DRAFT_02034 0.81 +0.2
156,379 + H281DRAFT_02034 0.81 +0.0
156,379 + H281DRAFT_02034 0.81 -0.1
156,379 + H281DRAFT_02034 0.81 +0.1
156,379 + H281DRAFT_02034 0.81 +0.5
156,383 - H281DRAFT_02034 0.81 +0.5
156,505 + -0.8
156,525 + -0.2
156,549 - -0.2
156,572 - -0.3
156,575 + -0.6
156,575 + -0.1
156,575 + -0.2
156,575 + -0.5
156,575 + +0.0
156,575 + -0.3
156,576 - -1.3
156,576 - -0.7
156,576 - -1.0
156,576 - -0.6
156,576 - -0.3
156,576 - -0.1
156,720 + +1.2
156,740 - +0.5
156,751 + +0.6
156,752 - +1.1
156,832 - -0.3
156,906 + H281DRAFT_02035 0.11 +0.4
156,906 + H281DRAFT_02035 0.11 -1.5
156,906 + H281DRAFT_02035 0.11 +0.7
156,907 - H281DRAFT_02035 0.11 -1.1
156,907 - H281DRAFT_02035 0.11 +0.2
156,907 - H281DRAFT_02035 0.11 -0.4
156,907 - H281DRAFT_02035 0.11 -0.2
156,939 + H281DRAFT_02035 0.16 +0.0
157,152 - H281DRAFT_02035 0.46 -0.5
157,205 + H281DRAFT_02035 0.53 -1.0
157,205 + H281DRAFT_02035 0.53 -0.6
157,206 - H281DRAFT_02035 0.54 +0.7
157,206 - H281DRAFT_02035 0.54 -0.5
157,206 - H281DRAFT_02035 0.54 +0.3
157,206 - H281DRAFT_02035 0.54 -1.8
157,211 + +1.6
157,270 + H281DRAFT_02035 0.63 -1.3
157,399 + H281DRAFT_02035 0.81 -0.3
157,400 - H281DRAFT_02035 0.81 -0.1
157,400 - H281DRAFT_02035 0.81 -1.0

Or see this region's nucleotide sequence