Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01685 and H281DRAFT_01686 are separated by 107 nucleotides H281DRAFT_01686 and H281DRAFT_01687 are separated by 81 nucleotides H281DRAFT_01687 and H281DRAFT_01688 are separated by 116 nucleotides
H281DRAFT_01685: H281DRAFT_01685 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 567,775 to 569,184
_01685
H281DRAFT_01686: H281DRAFT_01686 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 569,292 to 570,188
_01686
H281DRAFT_01687: H281DRAFT_01687 - carbonic anhydrase, at 570,270 to 570,812
_01687
H281DRAFT_01688: H281DRAFT_01688 - aliphatic nitrilase, at 570,929 to 571,915
_01688
Position (kb) 569
570
571 Strain fitness (log2 ratio) -1
0
1 at 568.370 kb on + strand, within H281DRAFT_01685 at 568.435 kb on - strand, within H281DRAFT_01685 at 568.784 kb on - strand, within H281DRAFT_01685 at 568.784 kb on - strand, within H281DRAFT_01685 at 568.835 kb on - strand, within H281DRAFT_01685 at 568.991 kb on - strand, within H281DRAFT_01685 at 569.338 kb on + strand at 569.426 kb on - strand, within H281DRAFT_01686 at 569.426 kb on - strand, within H281DRAFT_01686 at 569.436 kb on - strand, within H281DRAFT_01686 at 569.593 kb on + strand, within H281DRAFT_01686 at 569.876 kb on + strand, within H281DRAFT_01686 at 569.924 kb on - strand, within H281DRAFT_01686 at 569.972 kb on - strand, within H281DRAFT_01686 at 570.172 kb on + strand at 570.173 kb on - strand at 570.675 kb on + strand, within H281DRAFT_01687
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 568,370 + H281DRAFT_01685 0.42 +0.1 568,435 - H281DRAFT_01685 0.47 +0.0 568,784 - H281DRAFT_01685 0.72 -0.7 568,784 - H281DRAFT_01685 0.72 +1.5 568,835 - H281DRAFT_01685 0.75 +0.4 568,991 - H281DRAFT_01685 0.86 -0.6 569,338 + -0.3 569,426 - H281DRAFT_01686 0.15 +0.4 569,426 - H281DRAFT_01686 0.15 +0.5 569,436 - H281DRAFT_01686 0.16 -0.6 569,593 + H281DRAFT_01686 0.34 -1.1 569,876 + H281DRAFT_01686 0.65 +0.6 569,924 - H281DRAFT_01686 0.70 +0.8 569,972 - H281DRAFT_01686 0.76 -0.1 570,172 + +0.2 570,173 - +0.2 570,675 + H281DRAFT_01687 0.75 +0.3
Or see this region's nucleotide sequence