Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01654 and H281DRAFT_01655 are separated by 66 nucleotides H281DRAFT_01655 and H281DRAFT_01656 are separated by 70 nucleotides H281DRAFT_01656 and H281DRAFT_01657 are separated by 4 nucleotides H281DRAFT_01657 and H281DRAFT_01658 overlap by 4 nucleotides
H281DRAFT_01654: H281DRAFT_01654 - 3-phenylpropionate/cinnamic acid dioxygenase, small subunit, at 536,770 to 537,270
_01654
H281DRAFT_01655: H281DRAFT_01655 - 4-oxalocrotonate tautomerase family enzyme, at 537,337 to 537,711
_01655
H281DRAFT_01656: H281DRAFT_01656 - hypothetical protein, at 537,782 to 538,159
_01656
H281DRAFT_01657: H281DRAFT_01657 - SnoaL-like domain-containing protein, at 538,164 to 538,679
_01657
H281DRAFT_01658: H281DRAFT_01658 - amidase, at 538,676 to 539,818
_01658
Position (kb) 538
539 Strain fitness (log2 ratio) -1
0
1 at 537.729 kb on - strand at 537.767 kb on + strand at 537.791 kb on - strand at 537.927 kb on + strand, within H281DRAFT_01656 at 537.998 kb on + strand, within H281DRAFT_01656 at 538.076 kb on + strand at 538.077 kb on - strand, within H281DRAFT_01656 at 538.248 kb on + strand, within H281DRAFT_01657 at 538.249 kb on - strand, within H281DRAFT_01657 at 538.522 kb on - strand, within H281DRAFT_01657 at 538.883 kb on - strand, within H281DRAFT_01658 at 538.883 kb on - strand, within H281DRAFT_01658 at 538.960 kb on + strand, within H281DRAFT_01658 at 539.354 kb on + strand, within H281DRAFT_01658
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 537,729 - -0.4 537,767 + +0.1 537,791 - -0.3 537,927 + H281DRAFT_01656 0.38 +0.4 537,998 + H281DRAFT_01656 0.57 +0.1 538,076 + -0.6 538,077 - H281DRAFT_01656 0.78 +0.1 538,248 + H281DRAFT_01657 0.16 -0.5 538,249 - H281DRAFT_01657 0.16 -0.4 538,522 - H281DRAFT_01657 0.69 -0.6 538,883 - H281DRAFT_01658 0.18 +0.3 538,883 - H281DRAFT_01658 0.18 +0.3 538,960 + H281DRAFT_01658 0.25 -0.2 539,354 + H281DRAFT_01658 0.59 -0.4
Or see this region's nucleotide sequence