Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00462 and H281DRAFT_00463 are separated by 336 nucleotides H281DRAFT_00463 and H281DRAFT_00464 are separated by 354 nucleotides
H281DRAFT_00462: H281DRAFT_00462 - Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains, at 515,046 to 516,188
_00462
H281DRAFT_00463: H281DRAFT_00463 - methenyltetrahydrofolate cyclohydrolase /5,10-methylenetetrahydrofolate dehydrogenase (NADP+), at 516,525 to 517,385
_00463
H281DRAFT_00464: H281DRAFT_00464 - two component transcriptional regulator, LuxR family, at 517,740 to 518,387
_00464
H281DRAFT_00465: H281DRAFT_00465 - PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase, at 518,384 to 520,909
_00465
Position (kb) 516
517
518 Strain fitness (log2 ratio) -1
0
1 at 515.539 kb on + strand, within H281DRAFT_00462 at 515.540 kb on - strand, within H281DRAFT_00462 at 515.547 kb on + strand, within H281DRAFT_00462 at 515.573 kb on - strand, within H281DRAFT_00462 at 515.877 kb on + strand, within H281DRAFT_00462 at 515.878 kb on - strand, within H281DRAFT_00462 at 515.893 kb on - strand, within H281DRAFT_00462 at 515.899 kb on + strand, within H281DRAFT_00462 at 515.900 kb on - strand, within H281DRAFT_00462 at 515.900 kb on - strand, within H281DRAFT_00462 at 515.953 kb on - strand, within H281DRAFT_00462 at 515.958 kb on + strand, within H281DRAFT_00462 at 516.187 kb on - strand at 516.379 kb on - strand at 516.464 kb on + strand at 516.464 kb on + strand at 516.470 kb on - strand at 516.470 kb on - strand at 517.499 kb on - strand at 517.524 kb on - strand at 517.525 kb on + strand at 517.526 kb on - strand at 517.623 kb on + strand at 517.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 515,539 + H281DRAFT_00462 0.43 +0.3 515,540 - H281DRAFT_00462 0.43 -0.1 515,547 + H281DRAFT_00462 0.44 -1.0 515,573 - H281DRAFT_00462 0.46 +0.3 515,877 + H281DRAFT_00462 0.73 +0.3 515,878 - H281DRAFT_00462 0.73 +0.4 515,893 - H281DRAFT_00462 0.74 +0.5 515,899 + H281DRAFT_00462 0.75 +0.8 515,900 - H281DRAFT_00462 0.75 -0.6 515,900 - H281DRAFT_00462 0.75 +0.5 515,953 - H281DRAFT_00462 0.79 +0.5 515,958 + H281DRAFT_00462 0.80 +0.4 516,187 - -0.1 516,379 - -0.3 516,464 + -0.8 516,464 + +1.5 516,470 - -0.1 516,470 - -0.5 517,499 - +0.1 517,524 - -0.6 517,525 + -0.6 517,526 - +1.0 517,623 + +0.5 517,741 + -0.5
Or see this region's nucleotide sequence