Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00246

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00245 and H281DRAFT_00246 are separated by 178 nucleotidesH281DRAFT_00246 and H281DRAFT_00247 are separated by 159 nucleotidesH281DRAFT_00247 and H281DRAFT_00248 are separated by 222 nucleotides H281DRAFT_00245: H281DRAFT_00245 - MFS transporter, DHA2 family, multidrug resistance protein, at 262,591 to 264,039 _00245 H281DRAFT_00246: H281DRAFT_00246 - phospholipid-binding protein, PBP family, at 264,218 to 264,721 _00246 H281DRAFT_00247: H281DRAFT_00247 - T/G mismatch-specific endonuclease, at 264,881 to 265,327 _00247 H281DRAFT_00248: H281DRAFT_00248 - hypothetical protein, at 265,550 to 265,981 _00248 Position (kb) 264 265Strain fitness (log2 ratio) -1 0 1at 263.715 kb on - strandat 264.268 kb on + strandat 264.355 kb on - strand, within H281DRAFT_00246at 264.412 kb on - strand, within H281DRAFT_00246at 264.654 kb on + strand, within H281DRAFT_00246at 264.655 kb on - strand, within H281DRAFT_00246at 264.722 kb on + strandat 264.722 kb on + strandat 264.722 kb on + strandat 264.874 kb on + strandat 264.951 kb on - strand, within H281DRAFT_00247at 265.693 kb on - strand, within H281DRAFT_00248

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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263,715 - -0.0
264,268 + +0.3
264,355 - H281DRAFT_00246 0.27 +0.0
264,412 - H281DRAFT_00246 0.38 -0.3
264,654 + H281DRAFT_00246 0.87 -0.6
264,655 - H281DRAFT_00246 0.87 -0.7
264,722 + +1.0
264,722 + +0.4
264,722 + -0.5
264,874 + +0.3
264,951 - H281DRAFT_00247 0.16 -0.4
265,693 - H281DRAFT_00248 0.33 +0.4

Or see this region's nucleotide sequence