Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00030 and H281DRAFT_00031 are separated by 56 nucleotides H281DRAFT_00031 and H281DRAFT_00032 are separated by 63 nucleotides H281DRAFT_00032 and H281DRAFT_00033 are separated by 105 nucleotides H281DRAFT_00033 and H281DRAFT_00034 are separated by 676 nucleotides
H281DRAFT_00030: H281DRAFT_00030 - Transposase and inactivated derivatives, at 33,659 to 34,030
_00030
H281DRAFT_00031: H281DRAFT_00031 - Transposase C of IS166 homeodomain-containing protein, at 34,087 to 34,431
_00031
H281DRAFT_00032: H281DRAFT_00032 - Transposase, at 34,495 to 34,920
_00032
H281DRAFT_00033: H281DRAFT_00033 - IS66 C-terminal element, at 35,026 to 35,640
_00033
H281DRAFT_00034: H281DRAFT_00034 - hypothetical protein, at 36,317 to 36,478
_00034
Position (kb) 35
36 Strain fitness (log2 ratio) -2
-1
0
1 at 34.027 kb on - strand at 34.430 kb on - strand at 34.532 kb on - strand at 34.581 kb on - strand, within H281DRAFT_00032 at 34.684 kb on + strand, within H281DRAFT_00032 at 34.891 kb on - strand at 34.907 kb on - strand at 34.918 kb on + strand at 35.047 kb on + strand at 35.180 kb on - strand, within H281DRAFT_00033 at 35.180 kb on - strand, within H281DRAFT_00033 at 35.388 kb on - strand, within H281DRAFT_00033 at 35.545 kb on + strand, within H281DRAFT_00033 at 35.818 kb on + strand at 35.818 kb on + strand at 35.932 kb on - strand at 36.028 kb on + strand at 36.148 kb on + strand at 36.151 kb on - strand at 36.259 kb on - strand at 36.292 kb on - strand at 36.333 kb on - strand at 36.340 kb on + strand, within H281DRAFT_00034 at 36.478 kb on + strand at 36.479 kb on - strand at 36.572 kb on + strand at 36.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 34,027 - +0.3 34,430 - +1.0 34,532 - +0.1 34,581 - H281DRAFT_00032 0.20 +1.6 34,684 + H281DRAFT_00032 0.44 -0.4 34,891 - -0.5 34,907 - -0.4 34,918 + -0.8 35,047 + -0.3 35,180 - H281DRAFT_00033 0.25 -0.1 35,180 - H281DRAFT_00033 0.25 +0.2 35,388 - H281DRAFT_00033 0.59 +0.7 35,545 + H281DRAFT_00033 0.84 +0.4 35,818 + +0.3 35,818 + +0.7 35,932 - +0.1 36,028 + +0.2 36,148 + -0.3 36,151 - +0.4 36,259 - +0.8 36,292 - -1.0 36,333 - -2.3 36,340 + H281DRAFT_00034 0.14 -0.1 36,478 + +0.3 36,479 - +1.3 36,572 + -0.2 36,580 + +0.5
Or see this region's nucleotide sequence