Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06528 and H281DRAFT_06529 overlap by 4 nucleotides H281DRAFT_06529 and H281DRAFT_06530 are separated by 2 nucleotides H281DRAFT_06530 and H281DRAFT_06531 overlap by 17 nucleotides H281DRAFT_06531 and H281DRAFT_06532 are separated by 6 nucleotides
H281DRAFT_06528: H281DRAFT_06528 - cobalt-precorrin 5A hydrolase, at 10,000 to 10,422
_06528
H281DRAFT_06529: H281DRAFT_06529 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 10,419 to 11,021
_06529
H281DRAFT_06530: H281DRAFT_06530 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) (EC 6.3.5.9)/cobyrinate a,c-diamide synthase (EC 6.3.5.11), at 11,024 to 12,322
_06530
H281DRAFT_06531: H281DRAFT_06531 - cob(II)yrinic acid a,c-diamide reductase /5,6-dimethylbenzimidazole synthase, at 12,306 to 12,986
_06531
H281DRAFT_06532: H281DRAFT_06532 - protein of unknown function (DUF4136), at 12,993 to 13,634
_06532
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 10.038 kb on + strand at 10.038 kb on + strand at 10.038 kb on + strand at 10.039 kb on - strand at 10.039 kb on - strand at 10.039 kb on - strand at 10.119 kb on + strand, within H281DRAFT_06528 at 10.120 kb on - strand, within H281DRAFT_06528 at 10.120 kb on - strand, within H281DRAFT_06528 at 10.634 kb on + strand, within H281DRAFT_06529 at 10.635 kb on - strand, within H281DRAFT_06529 at 10.788 kb on + strand at 10.789 kb on - strand, within H281DRAFT_06529 at 10.831 kb on - strand, within H281DRAFT_06529 at 10.836 kb on + strand, within H281DRAFT_06529 at 10.837 kb on - strand, within H281DRAFT_06529 at 10.978 kb on - strand at 11.650 kb on + strand, within H281DRAFT_06530 at 11.651 kb on - strand at 11.651 kb on - strand, within H281DRAFT_06530 at 11.819 kb on + strand, within H281DRAFT_06530 at 11.820 kb on - strand, within H281DRAFT_06530 at 11.870 kb on + strand, within H281DRAFT_06530 at 12.150 kb on - strand, within H281DRAFT_06530 at 12.255 kb on - strand at 12.255 kb on - strand at 12.321 kb on - strand at 12.345 kb on + strand at 12.357 kb on + strand at 12.409 kb on + strand, within H281DRAFT_06531 at 12.503 kb on + strand, within H281DRAFT_06531 at 12.922 kb on + strand at 12.922 kb on + strand at 12.923 kb on - strand at 12.994 kb on + strand at 13.221 kb on - strand, within H281DRAFT_06532
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 10,038 + +0.6 10,038 + -0.1 10,038 + -0.4 10,039 - +1.4 10,039 - -0.5 10,039 - -0.6 10,119 + H281DRAFT_06528 0.28 +2.9 10,120 - H281DRAFT_06528 0.28 -0.0 10,120 - H281DRAFT_06528 0.28 +0.5 10,634 + H281DRAFT_06529 0.36 -0.7 10,635 - H281DRAFT_06529 0.36 +0.3 10,788 + -0.1 10,789 - H281DRAFT_06529 0.61 +0.1 10,831 - H281DRAFT_06529 0.68 -1.1 10,836 + H281DRAFT_06529 0.69 -1.8 10,837 - H281DRAFT_06529 0.69 -0.0 10,978 - -0.7 11,650 + H281DRAFT_06530 0.48 +0.7 11,651 - +0.5 11,651 - H281DRAFT_06530 0.48 -0.4 11,819 + H281DRAFT_06530 0.61 -0.9 11,820 - H281DRAFT_06530 0.61 -0.0 11,870 + H281DRAFT_06530 0.65 -0.5 12,150 - H281DRAFT_06530 0.87 -0.8 12,255 - +0.6 12,255 - +0.1 12,321 - +0.4 12,345 + +0.4 12,357 + +0.3 12,409 + H281DRAFT_06531 0.15 +0.5 12,503 + H281DRAFT_06531 0.29 +0.1 12,922 + -0.4 12,922 + -0.6 12,923 - -0.6 12,994 + +1.2 13,221 - H281DRAFT_06532 0.36 +0.2
Or see this region's nucleotide sequence