Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06121 and H281DRAFT_06122 are separated by 416 nucleotides H281DRAFT_06122 and H281DRAFT_06123 are separated by 12 nucleotides H281DRAFT_06123 and H281DRAFT_06124 are separated by 9 nucleotides
H281DRAFT_06121: H281DRAFT_06121 - DNA-binding transcriptional regulator, LysR family, at 1 to 927
_06121
H281DRAFT_06122: H281DRAFT_06122 - RES domain-containing protein, at 1,344 to 2,060
_06122
H281DRAFT_06123: H281DRAFT_06123 - hypothetical protein, at 2,073 to 2,759
_06123
H281DRAFT_06124: H281DRAFT_06124 - hypothetical protein, at 2,769 to 3,560
_06124
Position (kb) 1
2
3 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.394 kb on - strand, within H281DRAFT_06121 at 0.554 kb on - strand, within H281DRAFT_06121 at 0.720 kb on - strand, within H281DRAFT_06121 at 0.720 kb on - strand, within H281DRAFT_06121 at 0.722 kb on - strand, within H281DRAFT_06121 at 0.722 kb on - strand, within H281DRAFT_06121 at 0.806 kb on + strand, within H281DRAFT_06121 at 0.828 kb on - strand, within H281DRAFT_06121 at 0.925 kb on + strand at 0.929 kb on + strand at 0.929 kb on + strand at 0.930 kb on - strand at 0.937 kb on + strand at 0.937 kb on + strand at 0.937 kb on + strand at 1.057 kb on + strand at 1.057 kb on + strand at 1.057 kb on + strand at 1.153 kb on - strand at 1.173 kb on + strand at 1.278 kb on + strand at 1.278 kb on + strand at 1.278 kb on + strand at 1.279 kb on - strand at 1.335 kb on + strand at 1.335 kb on + strand at 1.336 kb on - strand at 1.336 kb on - strand at 1.336 kb on - strand at 1.336 kb on - strand at 1.336 kb on - strand at 1.336 kb on - strand at 1.420 kb on + strand, within H281DRAFT_06122 at 1.420 kb on + strand, within H281DRAFT_06122 at 1.420 kb on + strand, within H281DRAFT_06122 at 1.420 kb on + strand, within H281DRAFT_06122 at 1.421 kb on - strand, within H281DRAFT_06122 at 1.421 kb on - strand, within H281DRAFT_06122 at 1.421 kb on - strand, within H281DRAFT_06122 at 1.421 kb on - strand, within H281DRAFT_06122 at 1.535 kb on - strand, within H281DRAFT_06122 at 1.535 kb on - strand, within H281DRAFT_06122 at 1.688 kb on + strand, within H281DRAFT_06122 at 1.750 kb on + strand, within H281DRAFT_06122 at 1.751 kb on - strand, within H281DRAFT_06122 at 1.867 kb on - strand, within H281DRAFT_06122 at 1.918 kb on - strand, within H281DRAFT_06122 at 1.934 kb on - strand, within H281DRAFT_06122 at 1.964 kb on + strand, within H281DRAFT_06122 at 1.965 kb on - strand, within H281DRAFT_06122 at 1.971 kb on - strand, within H281DRAFT_06122 at 2.078 kb on - strand at 2.082 kb on + strand at 2.082 kb on + strand at 2.083 kb on - strand at 2.083 kb on - strand at 2.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 394 - H281DRAFT_06121 0.42 +0.6 554 - H281DRAFT_06121 0.60 +0.8 720 - H281DRAFT_06121 0.78 +0.1 720 - H281DRAFT_06121 0.78 -0.1 722 - H281DRAFT_06121 0.78 -0.1 722 - H281DRAFT_06121 0.78 -1.1 806 + H281DRAFT_06121 0.87 +0.1 828 - H281DRAFT_06121 0.89 -0.2 925 + -0.3 929 + -1.8 929 + -1.9 930 - -1.4 937 + -0.5 937 + -0.0 937 + -0.3 1,057 + -0.6 1,057 + +0.0 1,057 + +1.6 1,153 - +0.0 1,173 + +0.2 1,278 + -1.5 1,278 + +1.5 1,278 + +0.4 1,279 - -0.8 1,335 + -0.1 1,335 + -0.9 1,336 - -0.1 1,336 - +0.3 1,336 - -0.2 1,336 - -0.4 1,336 - +0.0 1,336 - +0.2 1,420 + H281DRAFT_06122 0.11 +0.6 1,420 + H281DRAFT_06122 0.11 +0.5 1,420 + H281DRAFT_06122 0.11 +1.8 1,420 + H281DRAFT_06122 0.11 +0.3 1,421 - H281DRAFT_06122 0.11 +0.6 1,421 - H281DRAFT_06122 0.11 +0.6 1,421 - H281DRAFT_06122 0.11 -0.3 1,421 - H281DRAFT_06122 0.11 +0.1 1,535 - H281DRAFT_06122 0.27 -0.3 1,535 - H281DRAFT_06122 0.27 +0.5 1,688 + H281DRAFT_06122 0.48 +1.0 1,750 + H281DRAFT_06122 0.57 -1.0 1,751 - H281DRAFT_06122 0.57 +0.1 1,867 - H281DRAFT_06122 0.73 -0.5 1,918 - H281DRAFT_06122 0.80 -0.5 1,934 - H281DRAFT_06122 0.82 +0.2 1,964 + H281DRAFT_06122 0.86 +0.6 1,965 - H281DRAFT_06122 0.87 +0.9 1,971 - H281DRAFT_06122 0.87 +2.7 2,078 - +0.6 2,082 + -0.2 2,082 + -0.1 2,083 - -0.1 2,083 - +0.0 2,771 - +0.0
Or see this region's nucleotide sequence