Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05987 and H281DRAFT_05988 are separated by 425 nucleotides H281DRAFT_05988 and H281DRAFT_05989 are separated by 295 nucleotides H281DRAFT_05989 and H281DRAFT_05990 are separated by 140 nucleotides
H281DRAFT_05987: H281DRAFT_05987 - Thioredoxin reductase, at 129,628 to 130,521
_05987
H281DRAFT_05988: H281DRAFT_05988 - Ubiquinone/menaquinone biosynthesis C-methylase UbiE, at 130,947 to 131,810
_05988
H281DRAFT_05989: H281DRAFT_05989 - Sortase and related acyltransferases, at 132,106 to 132,621
_05989
H281DRAFT_05990: H281DRAFT_05990 - DNA-binding transcriptional regulator, LysR family, at 132,762 to 133,757
_05990
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.130 kb on + strand, within H281DRAFT_05987 at 130.131 kb on - strand, within H281DRAFT_05987 at 130.131 kb on - strand, within H281DRAFT_05987 at 130.190 kb on + strand, within H281DRAFT_05987 at 130.195 kb on - strand, within H281DRAFT_05987 at 130.337 kb on + strand, within H281DRAFT_05987 at 130.418 kb on - strand, within H281DRAFT_05987 at 130.672 kb on - strand at 130.753 kb on - strand at 130.863 kb on + strand at 130.863 kb on + strand at 130.919 kb on + strand at 130.920 kb on - strand at 131.033 kb on + strand at 131.033 kb on + strand at 132.023 kb on + strand at 132.023 kb on + strand at 132.024 kb on - strand at 132.056 kb on + strand at 132.203 kb on + strand, within H281DRAFT_05989 at 132.203 kb on + strand, within H281DRAFT_05989 at 132.203 kb on + strand, within H281DRAFT_05989 at 132.204 kb on - strand, within H281DRAFT_05989 at 132.206 kb on + strand, within H281DRAFT_05989 at 132.206 kb on + strand, within H281DRAFT_05989 at 132.206 kb on + strand, within H281DRAFT_05989 at 132.206 kb on + strand, within H281DRAFT_05989 at 132.206 kb on + strand, within H281DRAFT_05989 at 132.207 kb on - strand, within H281DRAFT_05989 at 132.207 kb on - strand, within H281DRAFT_05989 at 132.384 kb on - strand, within H281DRAFT_05989 at 132.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 130,130 + H281DRAFT_05987 0.56 -0.0 130,131 - H281DRAFT_05987 0.56 +0.2 130,131 - H281DRAFT_05987 0.56 -1.0 130,190 + H281DRAFT_05987 0.63 -1.9 130,195 - H281DRAFT_05987 0.63 +0.7 130,337 + H281DRAFT_05987 0.79 +0.4 130,418 - H281DRAFT_05987 0.88 -0.8 130,672 - -0.5 130,753 - +0.2 130,863 + -0.5 130,863 + -0.7 130,919 + +0.8 130,920 - -0.3 131,033 + +1.1 131,033 + +0.1 132,023 + -0.9 132,023 + -1.3 132,024 - -0.2 132,056 + +0.3 132,203 + H281DRAFT_05989 0.19 -0.4 132,203 + H281DRAFT_05989 0.19 +0.6 132,203 + H281DRAFT_05989 0.19 +0.1 132,204 - H281DRAFT_05989 0.19 -0.4 132,206 + H281DRAFT_05989 0.19 -0.1 132,206 + H281DRAFT_05989 0.19 +1.8 132,206 + H281DRAFT_05989 0.19 -1.1 132,206 + H281DRAFT_05989 0.19 +1.4 132,206 + H281DRAFT_05989 0.19 +0.1 132,207 - H281DRAFT_05989 0.20 -0.0 132,207 - H281DRAFT_05989 0.20 +1.4 132,384 - H281DRAFT_05989 0.54 -0.5 132,663 - -0.3
Or see this region's nucleotide sequence