Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05558 and H281DRAFT_05559 are separated by 54 nucleotides H281DRAFT_05559 and H281DRAFT_05560 are separated by 130 nucleotides
H281DRAFT_05558: H281DRAFT_05558 - fatty-acyl-CoA synthase, at 148,537 to 150,189
_05558
H281DRAFT_05559: H281DRAFT_05559 - acetyl-CoA C-acetyltransferase, at 150,244 to 151,428
_05559
H281DRAFT_05560: H281DRAFT_05560 - putative acyl-CoA dehydrogenase, at 151,559 to 153,277
_05560
Position (kb) 150
151
152 Strain fitness (log2 ratio) -1
0
1 at 149.275 kb on + strand, within H281DRAFT_05558 at 149.275 kb on + strand, within H281DRAFT_05558 at 149.364 kb on - strand, within H281DRAFT_05558 at 149.507 kb on + strand, within H281DRAFT_05558 at 149.561 kb on + strand, within H281DRAFT_05558 at 149.618 kb on + strand, within H281DRAFT_05558 at 149.619 kb on - strand, within H281DRAFT_05558 at 149.699 kb on + strand, within H281DRAFT_05558 at 149.700 kb on - strand, within H281DRAFT_05558 at 149.700 kb on - strand, within H281DRAFT_05558 at 149.824 kb on + strand, within H281DRAFT_05558 at 149.855 kb on + strand, within H281DRAFT_05558 at 149.856 kb on - strand, within H281DRAFT_05558 at 149.883 kb on + strand, within H281DRAFT_05558 at 149.884 kb on - strand at 150.091 kb on + strand at 150.288 kb on + strand at 150.329 kb on - strand at 150.329 kb on - strand at 150.486 kb on + strand, within H281DRAFT_05559 at 150.814 kb on + strand, within H281DRAFT_05559 at 150.957 kb on + strand, within H281DRAFT_05559 at 150.957 kb on + strand, within H281DRAFT_05559 at 150.958 kb on - strand, within H281DRAFT_05559 at 151.232 kb on + strand, within H281DRAFT_05559 at 151.232 kb on + strand, within H281DRAFT_05559 at 151.232 kb on + strand, within H281DRAFT_05559 at 151.233 kb on - strand, within H281DRAFT_05559 at 151.233 kb on - strand, within H281DRAFT_05559 at 151.236 kb on + strand, within H281DRAFT_05559 at 151.236 kb on + strand, within H281DRAFT_05559 at 151.237 kb on - strand, within H281DRAFT_05559 at 151.237 kb on - strand, within H281DRAFT_05559 at 151.274 kb on - strand, within H281DRAFT_05559 at 151.274 kb on - strand, within H281DRAFT_05559 at 151.324 kb on + strand at 151.327 kb on + strand at 151.327 kb on + strand at 151.328 kb on - strand at 151.328 kb on - strand at 151.435 kb on - strand at 151.457 kb on + strand at 151.493 kb on + strand at 151.493 kb on + strand at 151.561 kb on - strand at 151.561 kb on - strand at 152.326 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 149,275 + H281DRAFT_05558 0.45 +0.3 149,275 + H281DRAFT_05558 0.45 +0.1 149,364 - H281DRAFT_05558 0.50 +1.3 149,507 + H281DRAFT_05558 0.59 -0.7 149,561 + H281DRAFT_05558 0.62 -0.5 149,618 + H281DRAFT_05558 0.65 +1.1 149,619 - H281DRAFT_05558 0.65 +1.0 149,699 + H281DRAFT_05558 0.70 -0.2 149,700 - H281DRAFT_05558 0.70 +0.7 149,700 - H281DRAFT_05558 0.70 -0.0 149,824 + H281DRAFT_05558 0.78 -0.4 149,855 + H281DRAFT_05558 0.80 +0.6 149,856 - H281DRAFT_05558 0.80 +0.2 149,883 + H281DRAFT_05558 0.81 -0.3 149,884 - -0.3 150,091 + +0.9 150,288 + +0.6 150,329 - -0.0 150,329 - -1.7 150,486 + H281DRAFT_05559 0.20 -0.0 150,814 + H281DRAFT_05559 0.48 -0.2 150,957 + H281DRAFT_05559 0.60 +1.6 150,957 + H281DRAFT_05559 0.60 -0.5 150,958 - H281DRAFT_05559 0.60 -0.8 151,232 + H281DRAFT_05559 0.83 -0.8 151,232 + H281DRAFT_05559 0.83 +0.5 151,232 + H281DRAFT_05559 0.83 -0.4 151,233 - H281DRAFT_05559 0.83 +1.0 151,233 - H281DRAFT_05559 0.83 +0.0 151,236 + H281DRAFT_05559 0.84 +0.2 151,236 + H281DRAFT_05559 0.84 +1.3 151,237 - H281DRAFT_05559 0.84 +0.4 151,237 - H281DRAFT_05559 0.84 -0.2 151,274 - H281DRAFT_05559 0.87 +0.1 151,274 - H281DRAFT_05559 0.87 -0.7 151,324 + -0.1 151,327 + -0.4 151,327 + -0.5 151,328 - -0.4 151,328 - +0.0 151,435 - +0.4 151,457 + -0.3 151,493 + -0.4 151,493 + +0.3 151,561 - +0.9 151,561 - -0.6 152,326 + +0.5
Or see this region's nucleotide sequence