Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05347 and H281DRAFT_05348 are separated by 13 nucleotides H281DRAFT_05348 and H281DRAFT_05349 are separated by 220 nucleotides H281DRAFT_05349 and H281DRAFT_05350 overlap by 31 nucleotides
H281DRAFT_05347: H281DRAFT_05347 - Nuclease-related domain-containing protein, at 98,602 to 100,296
_05347
H281DRAFT_05348: H281DRAFT_05348 - Hypoxanthine phosphoribosyltransferase, at 100,310 to 101,263
_05348
H281DRAFT_05349: H281DRAFT_05349 - hypothetical protein, at 101,484 to 102,026
_05349
H281DRAFT_05350: H281DRAFT_05350 - Signal transduction histidine kinase, at 101,996 to 103,846
_05350
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1 at 99.353 kb on + strand, within H281DRAFT_05347 at 99.355 kb on + strand, within H281DRAFT_05347 at 99.355 kb on + strand, within H281DRAFT_05347 at 99.355 kb on + strand, within H281DRAFT_05347 at 99.355 kb on + strand, within H281DRAFT_05347 at 99.356 kb on - strand, within H281DRAFT_05347 at 99.356 kb on - strand, within H281DRAFT_05347 at 99.388 kb on - strand, within H281DRAFT_05347 at 99.427 kb on + strand, within H281DRAFT_05347 at 99.670 kb on + strand, within H281DRAFT_05347 at 99.670 kb on + strand, within H281DRAFT_05347 at 99.671 kb on - strand, within H281DRAFT_05347 at 100.836 kb on + strand, within H281DRAFT_05348 at 101.379 kb on - strand at 101.379 kb on - strand at 101.379 kb on - strand at 101.473 kb on + strand at 101.473 kb on + strand at 101.494 kb on + strand at 101.665 kb on - strand, within H281DRAFT_05349 at 101.768 kb on + strand, within H281DRAFT_05349 at 101.827 kb on - strand, within H281DRAFT_05349 at 101.832 kb on + strand, within H281DRAFT_05349 at 101.832 kb on + strand, within H281DRAFT_05349 at 102.052 kb on - strand at 102.162 kb on - strand at 102.173 kb on + strand at 102.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 99,353 + H281DRAFT_05347 0.44 +0.4 99,355 + H281DRAFT_05347 0.44 -1.3 99,355 + H281DRAFT_05347 0.44 -1.0 99,355 + H281DRAFT_05347 0.44 +0.9 99,355 + H281DRAFT_05347 0.44 +1.3 99,356 - H281DRAFT_05347 0.44 -1.0 99,356 - H281DRAFT_05347 0.44 -0.3 99,388 - H281DRAFT_05347 0.46 +0.1 99,427 + H281DRAFT_05347 0.49 +0.5 99,670 + H281DRAFT_05347 0.63 +0.5 99,670 + H281DRAFT_05347 0.63 +1.5 99,671 - H281DRAFT_05347 0.63 +0.0 100,836 + H281DRAFT_05348 0.55 -2.3 101,379 - -0.9 101,379 - +1.0 101,379 - -0.6 101,473 + +0.3 101,473 + +0.1 101,494 + +0.3 101,665 - H281DRAFT_05349 0.33 -0.5 101,768 + H281DRAFT_05349 0.52 +0.5 101,827 - H281DRAFT_05349 0.63 -1.0 101,832 + H281DRAFT_05349 0.64 +0.9 101,832 + H281DRAFT_05349 0.64 +0.6 102,052 - -0.0 102,162 - -1.9 102,173 + -0.8 102,174 - -1.3
Or see this region's nucleotide sequence