Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05137 and H281DRAFT_05138 are separated by 28 nucleotides H281DRAFT_05138 and H281DRAFT_05139 are separated by 168 nucleotides H281DRAFT_05139 and H281DRAFT_05140 are separated by 91 nucleotides
H281DRAFT_05137: H281DRAFT_05137 - Signal transduction histidine kinase, at 89,881 to 92,589
_05137
H281DRAFT_05138: H281DRAFT_05138 - Predicted amino acid dehydrogenase, at 92,618 to 93,832
_05138
H281DRAFT_05139: H281DRAFT_05139 - Copper binding protein CusF, at 94,001 to 94,258
_05139
H281DRAFT_05140: H281DRAFT_05140 - Thiosulfate reductase cytochrome b subunit, at 94,350 to 94,997
_05140
Position (kb) 92
93
94 Strain fitness (log2 ratio) -1
0
1
2 at 91.769 kb on + strand, within H281DRAFT_05137 at 91.769 kb on + strand, within H281DRAFT_05137 at 92.358 kb on - strand at 92.474 kb on + strand at 92.475 kb on - strand at 92.475 kb on - strand at 92.584 kb on + strand at 92.585 kb on - strand at 92.609 kb on - strand at 92.627 kb on - strand at 92.812 kb on + strand, within H281DRAFT_05138 at 92.812 kb on + strand, within H281DRAFT_05138 at 92.813 kb on - strand, within H281DRAFT_05138 at 92.814 kb on + strand, within H281DRAFT_05138 at 92.815 kb on - strand, within H281DRAFT_05138 at 92.815 kb on - strand, within H281DRAFT_05138 at 92.890 kb on + strand, within H281DRAFT_05138 at 92.890 kb on + strand, within H281DRAFT_05138 at 92.890 kb on + strand, within H281DRAFT_05138 at 92.891 kb on - strand, within H281DRAFT_05138 at 92.891 kb on - strand, within H281DRAFT_05138 at 92.892 kb on + strand, within H281DRAFT_05138 at 92.892 kb on + strand, within H281DRAFT_05138 at 92.893 kb on - strand, within H281DRAFT_05138 at 92.893 kb on - strand, within H281DRAFT_05138 at 92.894 kb on + strand, within H281DRAFT_05138 at 92.895 kb on - strand at 92.895 kb on - strand, within H281DRAFT_05138 at 92.899 kb on + strand, within H281DRAFT_05138 at 92.899 kb on + strand, within H281DRAFT_05138 at 92.899 kb on + strand, within H281DRAFT_05138 at 92.899 kb on + strand at 93.067 kb on + strand, within H281DRAFT_05138 at 93.068 kb on - strand, within H281DRAFT_05138 at 93.068 kb on - strand, within H281DRAFT_05138 at 93.068 kb on - strand, within H281DRAFT_05138 at 93.190 kb on - strand, within H281DRAFT_05138 at 93.190 kb on - strand, within H281DRAFT_05138 at 93.375 kb on + strand, within H281DRAFT_05138 at 93.375 kb on + strand, within H281DRAFT_05138 at 93.376 kb on - strand, within H281DRAFT_05138 at 93.376 kb on - strand, within H281DRAFT_05138 at 93.387 kb on + strand, within H281DRAFT_05138 at 93.388 kb on - strand, within H281DRAFT_05138 at 93.652 kb on + strand, within H281DRAFT_05138 at 93.816 kb on + strand at 93.817 kb on - strand at 93.922 kb on + strand at 94.334 kb on + strand at 94.335 kb on - strand at 94.411 kb on - strand at 94.626 kb on + strand, within H281DRAFT_05140 at 94.626 kb on + strand, within H281DRAFT_05140 at 94.626 kb on + strand, within H281DRAFT_05140 at 94.627 kb on - strand, within H281DRAFT_05140 at 94.753 kb on - strand, within H281DRAFT_05140 at 94.776 kb on + strand at 94.776 kb on + strand, within H281DRAFT_05140
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 91,769 + H281DRAFT_05137 0.70 -1.1 91,769 + H281DRAFT_05137 0.70 +0.3 92,358 - +0.4 92,474 + -0.1 92,475 - +0.3 92,475 - +0.2 92,584 + -0.5 92,585 - +0.6 92,609 - +0.7 92,627 - +1.3 92,812 + H281DRAFT_05138 0.16 +0.3 92,812 + H281DRAFT_05138 0.16 +0.1 92,813 - H281DRAFT_05138 0.16 -0.6 92,814 + H281DRAFT_05138 0.16 +0.2 92,815 - H281DRAFT_05138 0.16 -1.6 92,815 - H281DRAFT_05138 0.16 -0.7 92,890 + H281DRAFT_05138 0.22 +0.6 92,890 + H281DRAFT_05138 0.22 -0.7 92,890 + H281DRAFT_05138 0.22 -0.4 92,891 - H281DRAFT_05138 0.22 -0.3 92,891 - H281DRAFT_05138 0.22 +0.0 92,892 + H281DRAFT_05138 0.23 -0.0 92,892 + H281DRAFT_05138 0.23 +0.5 92,893 - H281DRAFT_05138 0.23 -0.3 92,893 - H281DRAFT_05138 0.23 -0.1 92,894 + H281DRAFT_05138 0.23 +0.6 92,895 - +1.2 92,895 - H281DRAFT_05138 0.23 +1.0 92,899 + H281DRAFT_05138 0.23 -0.1 92,899 + H281DRAFT_05138 0.23 -0.0 92,899 + H281DRAFT_05138 0.23 +0.5 92,899 + +0.6 93,067 + H281DRAFT_05138 0.37 +1.8 93,068 - H281DRAFT_05138 0.37 -0.9 93,068 - H281DRAFT_05138 0.37 +0.9 93,068 - H281DRAFT_05138 0.37 +0.0 93,190 - H281DRAFT_05138 0.47 -0.4 93,190 - H281DRAFT_05138 0.47 -0.3 93,375 + H281DRAFT_05138 0.62 +1.1 93,375 + H281DRAFT_05138 0.62 +0.0 93,376 - H281DRAFT_05138 0.62 -0.8 93,376 - H281DRAFT_05138 0.62 -1.0 93,387 + H281DRAFT_05138 0.63 -0.6 93,388 - H281DRAFT_05138 0.63 -0.1 93,652 + H281DRAFT_05138 0.85 +1.3 93,816 + +1.3 93,817 - -0.4 93,922 + +0.2 94,334 + +0.1 94,335 - -0.1 94,411 - +0.1 94,626 + H281DRAFT_05140 0.43 -0.3 94,626 + H281DRAFT_05140 0.43 +0.1 94,626 + H281DRAFT_05140 0.43 -0.1 94,627 - H281DRAFT_05140 0.43 -0.0 94,753 - H281DRAFT_05140 0.62 -0.8 94,776 + +1.0 94,776 + H281DRAFT_05140 0.66 +0.4
Or see this region's nucleotide sequence