Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04358 and H281DRAFT_04359 overlap by 4 nucleotides H281DRAFT_04359 and H281DRAFT_04360 are separated by 150 nucleotides H281DRAFT_04360 and H281DRAFT_04361 are separated by 18 nucleotides
H281DRAFT_04358: H281DRAFT_04358 - serine protease Do, at 74,425 to 75,951
_04358
H281DRAFT_04359: H281DRAFT_04359 - Glutaredoxin and related proteins, at 75,948 to 76,211
_04359
H281DRAFT_04360: H281DRAFT_04360 - GTP-binding protein LepA, at 76,362 to 78,155
_04360
H281DRAFT_04361: H281DRAFT_04361 - signal peptidase I Serine peptidase. MEROPS family S26A, at 78,174 to 79,067
_04361
Position (kb) 76
77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 75.552 kb on + strand, within H281DRAFT_04358 at 75.552 kb on + strand, within H281DRAFT_04358 at 75.553 kb on - strand, within H281DRAFT_04358 at 76.055 kb on - strand, within H281DRAFT_04359 at 76.098 kb on + strand, within H281DRAFT_04359 at 76.099 kb on - strand, within H281DRAFT_04359 at 76.302 kb on + strand at 76.302 kb on + strand at 76.302 kb on + strand at 76.306 kb on + strand at 76.370 kb on + strand at 76.371 kb on - strand at 76.572 kb on + strand, within H281DRAFT_04360 at 76.572 kb on + strand, within H281DRAFT_04360 at 76.617 kb on + strand, within H281DRAFT_04360 at 76.711 kb on - strand, within H281DRAFT_04360 at 76.811 kb on - strand, within H281DRAFT_04360 at 76.968 kb on + strand, within H281DRAFT_04360 at 77.586 kb on + strand, within H281DRAFT_04360 at 77.586 kb on + strand, within H281DRAFT_04360 at 77.586 kb on + strand, within H281DRAFT_04360 at 77.601 kb on + strand, within H281DRAFT_04360 at 77.661 kb on + strand at 77.661 kb on + strand, within H281DRAFT_04360 at 77.966 kb on + strand, within H281DRAFT_04360 at 77.999 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 75,552 + H281DRAFT_04358 0.74 +0.9 75,552 + H281DRAFT_04358 0.74 -0.3 75,553 - H281DRAFT_04358 0.74 -0.9 76,055 - H281DRAFT_04359 0.41 +2.6 76,098 + H281DRAFT_04359 0.57 +0.2 76,099 - H281DRAFT_04359 0.57 +0.2 76,302 + -0.7 76,302 + +0.0 76,302 + +0.8 76,306 + -0.6 76,370 + -0.5 76,371 - -0.3 76,572 + H281DRAFT_04360 0.12 -0.3 76,572 + H281DRAFT_04360 0.12 -0.8 76,617 + H281DRAFT_04360 0.14 -2.3 76,711 - H281DRAFT_04360 0.19 -0.3 76,811 - H281DRAFT_04360 0.25 -1.5 76,968 + H281DRAFT_04360 0.34 -0.8 77,586 + H281DRAFT_04360 0.68 -1.3 77,586 + H281DRAFT_04360 0.68 -1.2 77,586 + H281DRAFT_04360 0.68 -1.4 77,601 + H281DRAFT_04360 0.69 -0.9 77,661 + -0.3 77,661 + H281DRAFT_04360 0.72 -3.1 77,966 + H281DRAFT_04360 0.89 -1.8 77,999 + -0.7
Or see this region's nucleotide sequence