Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04322 and H281DRAFT_04323 are separated by 322 nucleotides H281DRAFT_04323 and H281DRAFT_04324 overlap by 4 nucleotides H281DRAFT_04324 and H281DRAFT_04325 are separated by 70 nucleotides
H281DRAFT_04322: H281DRAFT_04322 - Protein of unknown function (DUF4088), at 40,876 to 41,643
_04322
H281DRAFT_04323: H281DRAFT_04323 - Branched-chain amino acid transport protein, at 41,966 to 42,295
_04323
H281DRAFT_04324: H281DRAFT_04324 - 4-azaleucine resistance probable transporter AzlC, at 42,292 to 43,029
_04324
H281DRAFT_04325: H281DRAFT_04325 - transcriptional regulator, AraC family, at 43,100 to 43,930
_04325
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1
2 at 41.442 kb on - strand, within H281DRAFT_04322 at 41.442 kb on - strand, within H281DRAFT_04322 at 41.442 kb on - strand, within H281DRAFT_04322 at 41.631 kb on + strand at 41.631 kb on + strand at 41.771 kb on - strand at 41.836 kb on + strand at 41.836 kb on + strand at 41.836 kb on + strand at 41.944 kb on + strand at 41.944 kb on + strand at 41.945 kb on - strand at 41.945 kb on - strand at 42.057 kb on - strand, within H281DRAFT_04323 at 42.288 kb on + strand at 42.289 kb on - strand at 42.289 kb on - strand at 42.289 kb on - strand at 42.289 kb on - strand at 42.355 kb on + strand at 42.355 kb on + strand at 42.404 kb on + strand, within H281DRAFT_04324 at 42.404 kb on + strand, within H281DRAFT_04324 at 42.405 kb on - strand, within H281DRAFT_04324 at 42.405 kb on - strand, within H281DRAFT_04324 at 42.462 kb on - strand, within H281DRAFT_04324 at 42.599 kb on + strand, within H281DRAFT_04324 at 42.626 kb on + strand, within H281DRAFT_04324 at 42.626 kb on + strand, within H281DRAFT_04324 at 42.627 kb on - strand, within H281DRAFT_04324 at 42.767 kb on + strand, within H281DRAFT_04324 at 42.768 kb on - strand, within H281DRAFT_04324 at 43.041 kb on + strand at 43.042 kb on - strand at 43.057 kb on + strand at 43.083 kb on + strand at 43.084 kb on - strand at 43.084 kb on - strand at 43.084 kb on - strand at 43.084 kb on - strand at 43.084 kb on - strand at 43.247 kb on + strand, within H281DRAFT_04325 at 43.248 kb on - strand, within H281DRAFT_04325 at 43.248 kb on - strand, within H281DRAFT_04325 at 43.525 kb on + strand, within H281DRAFT_04325 at 43.526 kb on - strand, within H281DRAFT_04325 at 43.526 kb on - strand, within H281DRAFT_04325 at 43.526 kb on - strand, within H281DRAFT_04325 at 43.654 kb on - strand, within H281DRAFT_04325 at 43.658 kb on + strand, within H281DRAFT_04325 at 43.749 kb on + strand, within H281DRAFT_04325 at 43.749 kb on + strand, within H281DRAFT_04325 at 43.750 kb on - strand, within H281DRAFT_04325 at 43.750 kb on - strand, within H281DRAFT_04325 at 43.806 kb on + strand, within H281DRAFT_04325 at 43.807 kb on - strand, within H281DRAFT_04325 at 43.807 kb on - strand, within H281DRAFT_04325 at 43.846 kb on - strand, within H281DRAFT_04325 at 43.944 kb on + strand at 43.959 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 41,442 - H281DRAFT_04322 0.74 +2.1 41,442 - H281DRAFT_04322 0.74 -0.5 41,442 - H281DRAFT_04322 0.74 -1.3 41,631 + +1.9 41,631 + +0.5 41,771 - -0.9 41,836 + +0.1 41,836 + -0.7 41,836 + -0.0 41,944 + +0.6 41,944 + +0.0 41,945 - -0.2 41,945 - +2.2 42,057 - H281DRAFT_04323 0.28 -0.2 42,288 + -0.2 42,289 - -0.3 42,289 - +0.4 42,289 - -1.1 42,289 - +0.3 42,355 + -0.3 42,355 + +0.2 42,404 + H281DRAFT_04324 0.15 +0.4 42,404 + H281DRAFT_04324 0.15 +0.1 42,405 - H281DRAFT_04324 0.15 +0.3 42,405 - H281DRAFT_04324 0.15 +2.0 42,462 - H281DRAFT_04324 0.23 +1.7 42,599 + H281DRAFT_04324 0.42 -0.7 42,626 + H281DRAFT_04324 0.45 -0.1 42,626 + H281DRAFT_04324 0.45 +0.9 42,627 - H281DRAFT_04324 0.45 +0.3 42,767 + H281DRAFT_04324 0.64 +0.5 42,768 - H281DRAFT_04324 0.64 -1.3 43,041 + +0.6 43,042 - -0.1 43,057 + +0.8 43,083 + -0.7 43,084 - +0.5 43,084 - +1.5 43,084 - -0.7 43,084 - -0.8 43,084 - -1.0 43,247 + H281DRAFT_04325 0.18 -0.3 43,248 - H281DRAFT_04325 0.18 -1.0 43,248 - H281DRAFT_04325 0.18 +1.2 43,525 + H281DRAFT_04325 0.51 -1.0 43,526 - H281DRAFT_04325 0.51 +1.4 43,526 - H281DRAFT_04325 0.51 +0.2 43,526 - H281DRAFT_04325 0.51 -0.1 43,654 - H281DRAFT_04325 0.67 +0.2 43,658 + H281DRAFT_04325 0.67 -0.1 43,749 + H281DRAFT_04325 0.78 +0.2 43,749 + H281DRAFT_04325 0.78 -1.3 43,750 - H281DRAFT_04325 0.78 +0.5 43,750 - H281DRAFT_04325 0.78 -0.5 43,806 + H281DRAFT_04325 0.85 -1.0 43,807 - H281DRAFT_04325 0.85 -0.3 43,807 - H281DRAFT_04325 0.85 +1.6 43,846 - H281DRAFT_04325 0.90 +0.4 43,944 + +0.0 43,959 + -0.2
Or see this region's nucleotide sequence