Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04315 and H281DRAFT_04316 are separated by 157 nucleotides H281DRAFT_04316 and H281DRAFT_04317 are separated by 483 nucleotides
H281DRAFT_04315: H281DRAFT_04315 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase, at 32,033 to 33,682
_04315
H281DRAFT_04316: H281DRAFT_04316 - bile acid:Na+ symporter, BASS family, at 33,840 to 34,799
_04316
H281DRAFT_04317: H281DRAFT_04317 - multidrug resistance protein, MATE family, at 35,283 to 36,695
_04317
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.042 kb on + strand, within H281DRAFT_04315 at 33.151 kb on + strand, within H281DRAFT_04315 at 33.151 kb on + strand, within H281DRAFT_04315 at 33.151 kb on + strand, within H281DRAFT_04315 at 33.152 kb on - strand, within H281DRAFT_04315 at 33.310 kb on - strand, within H281DRAFT_04315 at 33.360 kb on + strand, within H281DRAFT_04315 at 33.360 kb on + strand, within H281DRAFT_04315 at 33.360 kb on + strand, within H281DRAFT_04315 at 33.360 kb on + strand, within H281DRAFT_04315 at 33.361 kb on - strand, within H281DRAFT_04315 at 33.363 kb on + strand, within H281DRAFT_04315 at 33.363 kb on + strand, within H281DRAFT_04315 at 33.364 kb on - strand, within H281DRAFT_04315 at 33.364 kb on - strand, within H281DRAFT_04315 at 33.640 kb on + strand at 33.641 kb on - strand at 33.759 kb on + strand at 33.759 kb on + strand at 33.760 kb on - strand at 33.880 kb on + strand at 33.881 kb on - strand at 33.991 kb on + strand, within H281DRAFT_04316 at 33.992 kb on - strand, within H281DRAFT_04316 at 33.992 kb on - strand, within H281DRAFT_04316 at 34.077 kb on + strand, within H281DRAFT_04316 at 34.078 kb on - strand, within H281DRAFT_04316 at 34.078 kb on - strand, within H281DRAFT_04316 at 34.078 kb on - strand, within H281DRAFT_04316 at 34.370 kb on - strand, within H281DRAFT_04316 at 34.379 kb on + strand, within H281DRAFT_04316 at 34.380 kb on - strand, within H281DRAFT_04316 at 34.380 kb on - strand, within H281DRAFT_04316 at 34.462 kb on + strand, within H281DRAFT_04316 at 34.463 kb on - strand, within H281DRAFT_04316 at 34.463 kb on - strand, within H281DRAFT_04316 at 34.585 kb on + strand, within H281DRAFT_04316 at 34.586 kb on - strand, within H281DRAFT_04316 at 34.739 kb on - strand at 34.817 kb on + strand at 34.817 kb on + strand at 34.817 kb on + strand at 34.825 kb on - strand at 34.825 kb on - strand at 34.826 kb on + strand at 34.941 kb on + strand at 34.942 kb on - strand at 35.123 kb on + strand at 35.337 kb on + strand at 35.338 kb on - strand at 35.338 kb on - strand at 35.338 kb on - strand at 35.338 kb on - strand at 35.404 kb on - strand at 35.404 kb on - strand at 35.441 kb on + strand, within H281DRAFT_04317 at 35.441 kb on + strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.496 kb on + strand, within H281DRAFT_04317 at 35.496 kb on + strand, within H281DRAFT_04317 at 35.497 kb on - strand, within H281DRAFT_04317 at 35.600 kb on + strand, within H281DRAFT_04317 at 35.638 kb on + strand, within H281DRAFT_04317 at 35.638 kb on + strand, within H281DRAFT_04317 at 35.638 kb on + strand, within H281DRAFT_04317
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 33,042 + H281DRAFT_04315 0.61 -0.4 33,151 + H281DRAFT_04315 0.68 -2.3 33,151 + H281DRAFT_04315 0.68 +0.3 33,151 + H281DRAFT_04315 0.68 +0.5 33,152 - H281DRAFT_04315 0.68 -0.4 33,310 - H281DRAFT_04315 0.77 +0.0 33,360 + H281DRAFT_04315 0.80 +0.7 33,360 + H281DRAFT_04315 0.80 +0.3 33,360 + H281DRAFT_04315 0.80 -0.5 33,360 + H281DRAFT_04315 0.80 +0.5 33,361 - H281DRAFT_04315 0.80 +1.0 33,363 + H281DRAFT_04315 0.81 +1.9 33,363 + H281DRAFT_04315 0.81 -0.4 33,364 - H281DRAFT_04315 0.81 -0.2 33,364 - H281DRAFT_04315 0.81 +0.1 33,640 + -0.1 33,641 - +0.3 33,759 + -0.2 33,759 + +1.1 33,760 - +0.5 33,880 + -0.4 33,881 - +0.2 33,991 + H281DRAFT_04316 0.16 -0.7 33,992 - H281DRAFT_04316 0.16 +0.1 33,992 - H281DRAFT_04316 0.16 +0.5 34,077 + H281DRAFT_04316 0.25 +0.4 34,078 - H281DRAFT_04316 0.25 -0.9 34,078 - H281DRAFT_04316 0.25 -1.1 34,078 - H281DRAFT_04316 0.25 +0.1 34,370 - H281DRAFT_04316 0.55 -0.3 34,379 + H281DRAFT_04316 0.56 +1.1 34,380 - H281DRAFT_04316 0.56 +0.0 34,380 - H281DRAFT_04316 0.56 -0.6 34,462 + H281DRAFT_04316 0.65 +0.7 34,463 - H281DRAFT_04316 0.65 +0.0 34,463 - H281DRAFT_04316 0.65 -0.3 34,585 + H281DRAFT_04316 0.78 +0.1 34,586 - H281DRAFT_04316 0.78 -0.3 34,739 - +1.5 34,817 + +0.1 34,817 + +0.4 34,817 + +0.3 34,825 - +2.1 34,825 - +0.7 34,826 + +0.7 34,941 + -0.1 34,942 - -0.2 35,123 + -0.0 35,337 + -0.0 35,338 - +0.5 35,338 - +1.0 35,338 - +0.2 35,338 - +1.3 35,404 - +0.1 35,404 - -0.1 35,441 + H281DRAFT_04317 0.11 -0.0 35,441 + H281DRAFT_04317 0.11 -0.3 35,442 - H281DRAFT_04317 0.11 +1.2 35,442 - H281DRAFT_04317 0.11 -1.6 35,442 - H281DRAFT_04317 0.11 +0.6 35,442 - H281DRAFT_04317 0.11 +0.7 35,442 - H281DRAFT_04317 0.11 +0.4 35,496 + H281DRAFT_04317 0.15 +0.5 35,496 + H281DRAFT_04317 0.15 -0.7 35,497 - H281DRAFT_04317 0.15 +0.1 35,600 + H281DRAFT_04317 0.22 -1.1 35,638 + H281DRAFT_04317 0.25 +0.1 35,638 + H281DRAFT_04317 0.25 -0.3 35,638 + H281DRAFT_04317 0.25 -0.8
Or see this region's nucleotide sequence