Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04287 and H281DRAFT_04288 are separated by 165 nucleotides H281DRAFT_04288 and H281DRAFT_04289 are separated by 85 nucleotides H281DRAFT_04289 and H281DRAFT_04290 are separated by 21 nucleotides H281DRAFT_04290 and H281DRAFT_04291 are separated by 241 nucleotides
H281DRAFT_04287: H281DRAFT_04287 - D-amino-acid dehydrogenase, at 3,227 to 4,543
_04287
H281DRAFT_04288: H281DRAFT_04288 - transcriptional regulator, AsnC family, at 4,709 to 5,209
_04288
H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440
_04289
H281DRAFT_04290: H281DRAFT_04290 - TM2 domain-containing membrane protein YozV, at 6,462 to 6,929
_04290
H281DRAFT_04291: H281DRAFT_04291 - hypothetical protein, at 7,171 to 8,340
_04291
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.494 kb on + strand at 4.495 kb on - strand at 4.495 kb on - strand at 4.495 kb on - strand at 4.543 kb on + strand at 4.544 kb on - strand at 4.544 kb on - strand at 4.589 kb on + strand at 4.649 kb on + strand at 4.650 kb on - strand at 4.650 kb on - strand at 4.650 kb on - strand at 4.652 kb on + strand at 4.652 kb on + strand at 4.652 kb on + strand at 4.652 kb on + strand at 4.653 kb on - strand at 4.676 kb on + strand at 4.676 kb on + strand at 4.714 kb on + strand at 4.714 kb on + strand at 4.715 kb on - strand at 4.889 kb on + strand, within H281DRAFT_04288 at 4.890 kb on - strand, within H281DRAFT_04288 at 4.890 kb on - strand, within H281DRAFT_04288 at 4.932 kb on + strand, within H281DRAFT_04288 at 5.049 kb on - strand, within H281DRAFT_04288 at 5.049 kb on - strand, within H281DRAFT_04288 at 5.144 kb on + strand, within H281DRAFT_04288 at 5.144 kb on + strand, within H281DRAFT_04288 at 5.145 kb on - strand, within H281DRAFT_04288 at 5.207 kb on + strand at 5.207 kb on + strand at 5.208 kb on - strand at 5.280 kb on - strand at 5.280 kb on - strand at 5.291 kb on - strand at 5.416 kb on + strand, within H281DRAFT_04289 at 5.471 kb on + strand, within H281DRAFT_04289 at 5.472 kb on - strand, within H281DRAFT_04289 at 5.472 kb on - strand, within H281DRAFT_04289 at 5.472 kb on - strand, within H281DRAFT_04289 at 5.516 kb on + strand, within H281DRAFT_04289 at 5.516 kb on + strand, within H281DRAFT_04289 at 5.516 kb on + strand, within H281DRAFT_04289 at 5.516 kb on + strand, within H281DRAFT_04289 at 5.517 kb on - strand, within H281DRAFT_04289 at 5.517 kb on - strand, within H281DRAFT_04289 at 5.517 kb on - strand, within H281DRAFT_04289 at 5.517 kb on - strand, within H281DRAFT_04289 at 5.579 kb on + strand, within H281DRAFT_04289 at 5.579 kb on + strand, within H281DRAFT_04289 at 5.579 kb on + strand, within H281DRAFT_04289 at 5.579 kb on + strand at 5.579 kb on + strand, within H281DRAFT_04289 at 5.580 kb on - strand, within H281DRAFT_04289 at 5.580 kb on - strand, within H281DRAFT_04289 at 5.580 kb on - strand, within H281DRAFT_04289 at 5.580 kb on - strand, within H281DRAFT_04289 at 5.583 kb on + strand, within H281DRAFT_04289 at 5.583 kb on + strand, within H281DRAFT_04289 at 5.584 kb on - strand, within H281DRAFT_04289 at 5.610 kb on + strand, within H281DRAFT_04289 at 5.610 kb on + strand, within H281DRAFT_04289 at 5.610 kb on + strand, within H281DRAFT_04289 at 5.611 kb on - strand, within H281DRAFT_04289 at 5.611 kb on - strand, within H281DRAFT_04289 at 5.611 kb on - strand, within H281DRAFT_04289 at 5.611 kb on - strand, within H281DRAFT_04289 at 5.652 kb on + strand, within H281DRAFT_04289 at 5.652 kb on + strand, within H281DRAFT_04289 at 5.652 kb on + strand, within H281DRAFT_04289 at 5.652 kb on + strand, within H281DRAFT_04289 at 5.652 kb on + strand, within H281DRAFT_04289 at 5.652 kb on + strand, within H281DRAFT_04289 at 5.653 kb on - strand, within H281DRAFT_04289 at 5.706 kb on + strand, within H281DRAFT_04289 at 5.802 kb on - strand, within H281DRAFT_04289 at 5.802 kb on - strand, within H281DRAFT_04289 at 5.876 kb on + strand at 5.897 kb on + strand, within H281DRAFT_04289 at 5.897 kb on + strand, within H281DRAFT_04289 at 5.919 kb on - strand, within H281DRAFT_04289 at 5.923 kb on + strand, within H281DRAFT_04289 at 5.923 kb on + strand, within H281DRAFT_04289 at 5.924 kb on - strand, within H281DRAFT_04289 at 5.942 kb on + strand, within H281DRAFT_04289 at 6.117 kb on + strand, within H281DRAFT_04289 at 6.118 kb on - strand, within H281DRAFT_04289 at 6.118 kb on - strand, within H281DRAFT_04289 at 6.119 kb on + strand, within H281DRAFT_04289 at 6.233 kb on + strand, within H281DRAFT_04289 at 6.233 kb on + strand, within H281DRAFT_04289 at 6.234 kb on - strand, within H281DRAFT_04289 at 6.241 kb on - strand, within H281DRAFT_04289 at 6.363 kb on - strand at 6.439 kb on - strand at 6.506 kb on - strand at 6.582 kb on + strand, within H281DRAFT_04290 at 6.583 kb on - strand, within H281DRAFT_04290 at 6.583 kb on - strand, within H281DRAFT_04290 at 6.662 kb on - strand, within H281DRAFT_04290 at 6.826 kb on + strand, within H281DRAFT_04290 at 6.826 kb on + strand, within H281DRAFT_04290 at 6.832 kb on + strand, within H281DRAFT_04290 at 6.832 kb on + strand, within H281DRAFT_04290 at 6.885 kb on - strand at 6.885 kb on - strand at 6.885 kb on - strand at 6.902 kb on - strand at 6.931 kb on + strand at 6.932 kb on - strand at 6.932 kb on - strand at 6.932 kb on - strand at 6.932 kb on - strand at 6.932 kb on - strand at 6.932 kb on - strand at 6.932 kb on - strand at 6.946 kb on + strand at 6.946 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.057 kb on - strand at 7.184 kb on + strand at 7.184 kb on + strand at 7.185 kb on - strand at 7.185 kb on - strand at 7.185 kb on - strand at 7.196 kb on + strand at 7.196 kb on + strand at 7.197 kb on - strand at 7.197 kb on - strand at 7.197 kb on - strand at 7.200 kb on + strand at 7.200 kb on + strand at 7.200 kb on + strand at 7.201 kb on - strand at 7.212 kb on - strand at 7.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,494 + +0.1 4,495 - -0.5 4,495 - -0.1 4,495 - +0.1 4,543 + -2.1 4,544 - -2.0 4,544 - -0.5 4,589 + -1.9 4,649 + -0.1 4,650 - -1.7 4,650 - -0.2 4,650 - +2.2 4,652 + -1.7 4,652 + -1.1 4,652 + -0.2 4,652 + +2.2 4,653 - -0.3 4,676 + +0.3 4,676 + -0.7 4,714 + -0.7 4,714 + -0.6 4,715 - -0.6 4,889 + H281DRAFT_04288 0.36 -2.5 4,890 - H281DRAFT_04288 0.36 -0.8 4,890 - H281DRAFT_04288 0.36 -0.4 4,932 + H281DRAFT_04288 0.45 -0.2 5,049 - H281DRAFT_04288 0.68 -0.1 5,049 - H281DRAFT_04288 0.68 -1.6 5,144 + H281DRAFT_04288 0.87 -0.5 5,144 + H281DRAFT_04288 0.87 -1.5 5,145 - H281DRAFT_04288 0.87 -0.8 5,207 + +0.9 5,207 + +0.0 5,208 - -0.6 5,280 - +0.1 5,280 - +0.5 5,291 - +0.0 5,416 + H281DRAFT_04289 0.11 -0.1 5,471 + H281DRAFT_04289 0.15 -0.4 5,472 - H281DRAFT_04289 0.15 -0.1 5,472 - H281DRAFT_04289 0.15 -0.3 5,472 - H281DRAFT_04289 0.15 +0.2 5,516 + H281DRAFT_04289 0.19 -0.3 5,516 + H281DRAFT_04289 0.19 -0.5 5,516 + H281DRAFT_04289 0.19 -0.2 5,516 + H281DRAFT_04289 0.19 -0.4 5,517 - H281DRAFT_04289 0.19 -0.0 5,517 - H281DRAFT_04289 0.19 +0.2 5,517 - H281DRAFT_04289 0.19 -0.2 5,517 - H281DRAFT_04289 0.19 -0.8 5,579 + H281DRAFT_04289 0.25 -0.1 5,579 + H281DRAFT_04289 0.25 -0.0 5,579 + H281DRAFT_04289 0.25 +0.1 5,579 + +0.3 5,579 + H281DRAFT_04289 0.25 -0.5 5,580 - H281DRAFT_04289 0.25 -0.7 5,580 - H281DRAFT_04289 0.25 -0.2 5,580 - H281DRAFT_04289 0.25 -0.3 5,580 - H281DRAFT_04289 0.25 -0.5 5,583 + H281DRAFT_04289 0.25 -0.4 5,583 + H281DRAFT_04289 0.25 -0.5 5,584 - H281DRAFT_04289 0.25 +0.5 5,610 + H281DRAFT_04289 0.27 -0.8 5,610 + H281DRAFT_04289 0.27 +0.4 5,610 + H281DRAFT_04289 0.27 -0.8 5,611 - H281DRAFT_04289 0.28 -0.3 5,611 - H281DRAFT_04289 0.28 -0.4 5,611 - H281DRAFT_04289 0.28 -0.4 5,611 - H281DRAFT_04289 0.28 +1.2 5,652 + H281DRAFT_04289 0.31 +0.7 5,652 + H281DRAFT_04289 0.31 +0.6 5,652 + H281DRAFT_04289 0.31 +1.7 5,652 + H281DRAFT_04289 0.31 +0.5 5,652 + H281DRAFT_04289 0.31 +1.3 5,652 + H281DRAFT_04289 0.31 +0.7 5,653 - H281DRAFT_04289 0.31 -0.1 5,706 + H281DRAFT_04289 0.36 -0.3 5,802 - H281DRAFT_04289 0.44 +0.8 5,802 - H281DRAFT_04289 0.44 -0.1 5,876 + -0.3 5,897 + H281DRAFT_04289 0.53 -0.1 5,897 + H281DRAFT_04289 0.53 +0.2 5,919 - H281DRAFT_04289 0.54 -0.1 5,923 + H281DRAFT_04289 0.55 -0.0 5,923 + H281DRAFT_04289 0.55 -0.0 5,924 - H281DRAFT_04289 0.55 +0.1 5,942 + H281DRAFT_04289 0.56 +0.7 6,117 + H281DRAFT_04289 0.72 +0.5 6,118 - H281DRAFT_04289 0.72 +0.4 6,118 - H281DRAFT_04289 0.72 +0.9 6,119 + H281DRAFT_04289 0.72 +0.2 6,233 + H281DRAFT_04289 0.82 +0.2 6,233 + H281DRAFT_04289 0.82 +0.1 6,234 - H281DRAFT_04289 0.82 -0.1 6,241 - H281DRAFT_04289 0.83 -0.4 6,363 - +1.9 6,439 - -0.1 6,506 - -0.6 6,582 + H281DRAFT_04290 0.26 +2.3 6,583 - H281DRAFT_04290 0.26 -0.2 6,583 - H281DRAFT_04290 0.26 +0.1 6,662 - H281DRAFT_04290 0.43 +0.0 6,826 + H281DRAFT_04290 0.78 +1.8 6,826 + H281DRAFT_04290 0.78 +0.7 6,832 + H281DRAFT_04290 0.79 -0.3 6,832 + H281DRAFT_04290 0.79 +0.3 6,885 - -0.2 6,885 - +0.4 6,885 - +0.7 6,902 - -1.0 6,931 + -0.1 6,932 - +0.7 6,932 - +0.2 6,932 - -0.1 6,932 - -0.9 6,932 - -0.7 6,932 - +0.5 6,932 - -0.1 6,946 + +0.2 6,946 + +0.9 7,024 + -0.5 7,024 + +0.2 7,025 - +0.4 7,025 - -0.1 7,057 - +0.9 7,184 + +0.1 7,184 + +0.5 7,185 - +0.6 7,185 - +0.7 7,185 - +1.2 7,196 + +0.5 7,196 + +0.7 7,197 - +0.1 7,197 - +0.7 7,197 - -0.8 7,200 + +0.4 7,200 + +0.6 7,200 + +0.7 7,201 - +0.9 7,212 - +0.3 7,225 - +0.2
Or see this region's nucleotide sequence