Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04114 and H281DRAFT_04115 are separated by 114 nucleotides H281DRAFT_04115 and H281DRAFT_04116 are separated by 5 nucleotides H281DRAFT_04116 and H281DRAFT_04117 are separated by 504 nucleotides H281DRAFT_04117 and H281DRAFT_04118 are separated by 183 nucleotides
H281DRAFT_04114: H281DRAFT_04114 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 224,779 to 225,537
_04114
H281DRAFT_04115: H281DRAFT_04115 - Regulator of sirC expression, contains transglutaminase-like and TPR domains, at 225,652 to 226,494
_04115
H281DRAFT_04116: H281DRAFT_04116 - putative peptidoglycan lipid II flippase, at 226,500 to 228,050
_04116
H281DRAFT_04117: H281DRAFT_04117 - SSU ribosomal protein S20P, at 228,555 to 228,833
_04117
H281DRAFT_04118: H281DRAFT_04118 - Protein of unknown function (DUF3579), at 229,017 to 229,364
_04118
Position (kb) 226
227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 225.535 kb on + strand at 225.536 kb on - strand at 225.536 kb on - strand at 225.610 kb on - strand at 225.653 kb on + strand at 225.654 kb on - strand at 225.666 kb on + strand at 225.666 kb on + strand at 225.779 kb on + strand, within H281DRAFT_04115 at 225.841 kb on + strand, within H281DRAFT_04115 at 225.841 kb on + strand, within H281DRAFT_04115 at 225.842 kb on - strand, within H281DRAFT_04115 at 225.842 kb on - strand, within H281DRAFT_04115 at 225.842 kb on - strand, within H281DRAFT_04115 at 225.843 kb on + strand at 225.843 kb on + strand, within H281DRAFT_04115 at 225.843 kb on + strand, within H281DRAFT_04115 at 225.844 kb on - strand, within H281DRAFT_04115 at 225.896 kb on + strand, within H281DRAFT_04115 at 225.896 kb on + strand, within H281DRAFT_04115 at 225.921 kb on + strand, within H281DRAFT_04115 at 225.921 kb on + strand, within H281DRAFT_04115 at 225.922 kb on - strand, within H281DRAFT_04115 at 226.163 kb on + strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.241 kb on + strand, within H281DRAFT_04115 at 226.241 kb on + strand, within H281DRAFT_04115 at 226.475 kb on + strand at 226.523 kb on - strand at 226.528 kb on + strand at 226.528 kb on + strand at 228.060 kb on - strand at 228.060 kb on - strand at 228.060 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.064 kb on + strand at 228.064 kb on + strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.859 kb on + strand at 228.860 kb on - strand at 228.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 225,535 + +0.5 225,536 - +1.0 225,536 - +0.4 225,610 - -0.9 225,653 + -0.8 225,654 - +0.5 225,666 + -1.0 225,666 + +0.7 225,779 + H281DRAFT_04115 0.15 -2.3 225,841 + H281DRAFT_04115 0.22 -0.9 225,841 + H281DRAFT_04115 0.22 -0.8 225,842 - H281DRAFT_04115 0.23 -0.8 225,842 - H281DRAFT_04115 0.23 +0.3 225,842 - H281DRAFT_04115 0.23 -0.6 225,843 + +3.8 225,843 + H281DRAFT_04115 0.23 -0.5 225,843 + H281DRAFT_04115 0.23 -0.4 225,844 - H281DRAFT_04115 0.23 +0.4 225,896 + H281DRAFT_04115 0.29 -0.8 225,896 + H281DRAFT_04115 0.29 -1.8 225,921 + H281DRAFT_04115 0.32 +1.4 225,921 + H281DRAFT_04115 0.32 -1.0 225,922 - H281DRAFT_04115 0.32 -0.1 226,163 + H281DRAFT_04115 0.61 +0.5 226,239 - H281DRAFT_04115 0.70 -0.2 226,239 - H281DRAFT_04115 0.70 +0.4 226,239 - H281DRAFT_04115 0.70 +0.2 226,239 - H281DRAFT_04115 0.70 -0.1 226,239 - H281DRAFT_04115 0.70 +0.4 226,241 + H281DRAFT_04115 0.70 +0.7 226,241 + H281DRAFT_04115 0.70 -0.7 226,475 + +0.1 226,523 - -2.0 226,528 + +0.2 226,528 + -3.6 228,060 - +0.8 228,060 - -0.4 228,060 - +1.8 228,063 - -0.2 228,063 - -1.4 228,063 - -0.8 228,063 - -0.3 228,064 + -0.8 228,064 + -0.0 228,065 - -1.2 228,065 - +0.3 228,065 - -0.0 228,065 - +2.2 228,065 - -0.3 228,859 + +0.3 228,860 - -0.4 228,924 + +0.1
Or see this region's nucleotide sequence