Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03898 and H281DRAFT_03899 overlap by 4 nucleotides H281DRAFT_03899 and H281DRAFT_03900 are separated by 22 nucleotides H281DRAFT_03900 and H281DRAFT_03901 are separated by 280 nucleotides H281DRAFT_03901 and H281DRAFT_03902 are separated by 91 nucleotides
H281DRAFT_03898: H281DRAFT_03898 - DUF2300 domain-containing protein YfaQ, at 433,953 to 435,737
_03898
H281DRAFT_03899: H281DRAFT_03899 - Uncharacterized conserved protein YfaP, DUF2135 family, at 435,734 to 436,618
_03899
H281DRAFT_03900: H281DRAFT_03900 - Uncharacterized conserved protein YfaP, DUF2135 family, at 436,641 to 437,441
_03900
H281DRAFT_03901: H281DRAFT_03901 - hypothetical protein, at 437,722 to 438,114
_03901
H281DRAFT_03902: H281DRAFT_03902 - RNA polymerase, sigma 70 subunit, RpoD, at 438,206 to 440,200
_03902
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 436.095 kb on - strand, within H281DRAFT_03899 at 436.203 kb on - strand, within H281DRAFT_03899 at 436.203 kb on - strand, within H281DRAFT_03899 at 436.415 kb on - strand, within H281DRAFT_03899 at 436.415 kb on - strand, within H281DRAFT_03899 at 436.437 kb on - strand, within H281DRAFT_03899 at 436.534 kb on + strand at 436.681 kb on - strand at 436.796 kb on + strand, within H281DRAFT_03900 at 436.796 kb on + strand, within H281DRAFT_03900 at 436.796 kb on + strand, within H281DRAFT_03900 at 436.796 kb on + strand, within H281DRAFT_03900 at 436.981 kb on - strand, within H281DRAFT_03900 at 437.053 kb on - strand, within H281DRAFT_03900 at 437.053 kb on - strand, within H281DRAFT_03900 at 437.062 kb on - strand at 437.093 kb on - strand, within H281DRAFT_03900 at 437.093 kb on - strand, within H281DRAFT_03900 at 437.093 kb on - strand, within H281DRAFT_03900 at 437.238 kb on + strand, within H281DRAFT_03900 at 437.239 kb on - strand, within H281DRAFT_03900 at 437.239 kb on - strand, within H281DRAFT_03900 at 437.268 kb on + strand, within H281DRAFT_03900 at 437.268 kb on + strand, within H281DRAFT_03900 at 437.287 kb on - strand, within H281DRAFT_03900 at 437.287 kb on - strand, within H281DRAFT_03900 at 437.518 kb on - strand at 437.633 kb on - strand at 437.633 kb on - strand at 437.675 kb on + strand at 437.675 kb on + strand at 437.832 kb on + strand, within H281DRAFT_03901 at 437.833 kb on - strand, within H281DRAFT_03901 at 437.912 kb on + strand, within H281DRAFT_03901 at 437.913 kb on - strand, within H281DRAFT_03901 at 438.050 kb on - strand, within H281DRAFT_03901 at 438.109 kb on - strand at 438.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 436,095 - H281DRAFT_03899 0.41 -0.4 436,203 - H281DRAFT_03899 0.53 -1.5 436,203 - H281DRAFT_03899 0.53 +0.3 436,415 - H281DRAFT_03899 0.77 -0.2 436,415 - H281DRAFT_03899 0.77 +1.9 436,437 - H281DRAFT_03899 0.79 +0.6 436,534 + -0.4 436,681 - +0.5 436,796 + H281DRAFT_03900 0.19 -0.2 436,796 + H281DRAFT_03900 0.19 -0.0 436,796 + H281DRAFT_03900 0.19 -0.2 436,796 + H281DRAFT_03900 0.19 +0.2 436,981 - H281DRAFT_03900 0.42 -0.3 437,053 - H281DRAFT_03900 0.51 -0.5 437,053 - H281DRAFT_03900 0.51 -2.8 437,062 - +0.8 437,093 - H281DRAFT_03900 0.56 -0.2 437,093 - H281DRAFT_03900 0.56 +0.3 437,093 - H281DRAFT_03900 0.56 +0.5 437,238 + H281DRAFT_03900 0.75 -0.2 437,239 - H281DRAFT_03900 0.75 -0.5 437,239 - H281DRAFT_03900 0.75 -0.2 437,268 + H281DRAFT_03900 0.78 +0.2 437,268 + H281DRAFT_03900 0.78 -0.1 437,287 - H281DRAFT_03900 0.81 +0.1 437,287 - H281DRAFT_03900 0.81 +0.6 437,518 - -0.2 437,633 - +0.9 437,633 - -0.2 437,675 + +1.6 437,675 + +0.2 437,832 + H281DRAFT_03901 0.28 +0.6 437,833 - H281DRAFT_03901 0.28 -0.9 437,912 + H281DRAFT_03901 0.48 +0.3 437,913 - H281DRAFT_03901 0.49 +0.3 438,050 - H281DRAFT_03901 0.83 -0.3 438,109 - +0.2 438,367 + -3.0
Or see this region's nucleotide sequence