Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03591 and H281DRAFT_03592 are separated by 735 nucleotides H281DRAFT_03592 and H281DRAFT_03593 are separated by 453 nucleotides
H281DRAFT_03591: H281DRAFT_03591 - replication region DNA-binding N-term, at 99,221 to 100,426
_03591
H281DRAFT_03592: H281DRAFT_03592 - hypothetical protein, at 101,162 to 101,785
_03592
H281DRAFT_03593: H281DRAFT_03593 - Initiator Replication protein, at 102,239 to 103,585
_03593
Position (kb) 101
102 Strain fitness (log2 ratio) -2
-1
0
1 at 100.247 kb on + strand, within H281DRAFT_03591 at 100.248 kb on - strand, within H281DRAFT_03591 at 100.248 kb on - strand, within H281DRAFT_03591 at 100.248 kb on - strand, within H281DRAFT_03591 at 100.426 kb on + strand at 100.426 kb on + strand at 100.426 kb on + strand at 100.427 kb on - strand at 100.427 kb on - strand at 100.427 kb on - strand at 100.427 kb on - strand at 100.427 kb on - strand at 100.427 kb on - strand at 100.460 kb on - strand at 100.471 kb on - strand at 100.484 kb on + strand at 100.550 kb on + strand at 101.060 kb on + strand at 101.266 kb on + strand, within H281DRAFT_03592 at 101.266 kb on + strand, within H281DRAFT_03592 at 101.267 kb on - strand, within H281DRAFT_03592 at 101.432 kb on + strand, within H281DRAFT_03592 at 101.433 kb on - strand, within H281DRAFT_03592 at 101.544 kb on - strand, within H281DRAFT_03592 at 101.746 kb on + strand at 101.797 kb on + strand at 101.797 kb on + strand at 101.798 kb on - strand at 101.798 kb on - strand at 101.848 kb on - strand at 101.920 kb on + strand at 101.920 kb on + strand at 101.921 kb on - strand at 101.921 kb on - strand at 101.923 kb on - strand at 101.969 kb on - strand at 102.182 kb on + strand at 102.182 kb on + strand at 102.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 100,247 + H281DRAFT_03591 0.85 -0.5 100,248 - H281DRAFT_03591 0.85 -1.8 100,248 - H281DRAFT_03591 0.85 -0.9 100,248 - H281DRAFT_03591 0.85 -0.2 100,426 + -2.1 100,426 + -0.5 100,426 + -0.4 100,427 - -0.3 100,427 - -0.7 100,427 - -0.3 100,427 - +0.0 100,427 - -1.0 100,427 - -0.1 100,460 - +0.3 100,471 - +0.0 100,484 + +0.4 100,550 + -1.5 101,060 + -1.9 101,266 + H281DRAFT_03592 0.17 -1.8 101,266 + H281DRAFT_03592 0.17 -1.9 101,267 - H281DRAFT_03592 0.17 +0.1 101,432 + H281DRAFT_03592 0.43 +1.4 101,433 - H281DRAFT_03592 0.43 -0.1 101,544 - H281DRAFT_03592 0.61 -1.7 101,746 + -1.2 101,797 + +0.4 101,797 + +1.0 101,798 - -1.0 101,798 - -0.4 101,848 - +0.5 101,920 + +0.6 101,920 + -0.5 101,921 - +0.5 101,921 - -0.8 101,923 - +0.1 101,969 - -0.0 102,182 + +0.3 102,182 + -0.2 102,182 + +1.2
Or see this region's nucleotide sequence