Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03561 and H281DRAFT_03562 are separated by 165 nucleotides H281DRAFT_03562 and H281DRAFT_03563 are separated by 5 nucleotides
H281DRAFT_03561: H281DRAFT_03561 - Threonine/homoserine efflux transporter RhtA, at 66,957 to 67,853
_03561
H281DRAFT_03562: H281DRAFT_03562 - AraC family transcriptional regulator, at 68,019 to 68,936
_03562
H281DRAFT_03563: H281DRAFT_03563 - FAD/FMN-containing dehydrogenase, at 68,942 to 71,962
_03563
Position (kb) 68
69 Strain fitness (log2 ratio) -1
0
1
2
3 at 67.063 kb on + strand, within H281DRAFT_03561 at 67.219 kb on + strand, within H281DRAFT_03561 at 67.219 kb on + strand, within H281DRAFT_03561 at 67.219 kb on + strand, within H281DRAFT_03561 at 67.220 kb on - strand, within H281DRAFT_03561 at 67.467 kb on - strand, within H281DRAFT_03561 at 67.609 kb on + strand, within H281DRAFT_03561 at 67.612 kb on + strand, within H281DRAFT_03561 at 67.613 kb on - strand, within H281DRAFT_03561 at 67.955 kb on + strand at 67.955 kb on + strand at 67.956 kb on - strand at 67.982 kb on - strand at 67.985 kb on + strand at 67.985 kb on + strand at 67.985 kb on + strand at 67.985 kb on + strand at 67.986 kb on - strand at 67.986 kb on - strand at 67.994 kb on - strand at 68.227 kb on - strand, within H281DRAFT_03562 at 68.303 kb on - strand, within H281DRAFT_03562 at 68.343 kb on - strand, within H281DRAFT_03562 at 68.362 kb on - strand, within H281DRAFT_03562 at 68.445 kb on + strand, within H281DRAFT_03562 at 68.445 kb on + strand, within H281DRAFT_03562 at 68.842 kb on + strand, within H281DRAFT_03562 at 68.843 kb on - strand, within H281DRAFT_03562 at 68.870 kb on + strand at 68.935 kb on - strand at 68.935 kb on - strand at 69.077 kb on + strand at 69.078 kb on - strand at 69.078 kb on - strand at 69.111 kb on + strand at 69.218 kb on - strand at 69.384 kb on + strand, within H281DRAFT_03563 at 69.662 kb on + strand, within H281DRAFT_03563 at 69.662 kb on + strand, within H281DRAFT_03563 at 69.663 kb on - strand, within H281DRAFT_03563
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 67,063 + H281DRAFT_03561 0.12 -0.2 67,219 + H281DRAFT_03561 0.29 -0.8 67,219 + H281DRAFT_03561 0.29 -0.3 67,219 + H281DRAFT_03561 0.29 -0.5 67,220 - H281DRAFT_03561 0.29 +0.7 67,467 - H281DRAFT_03561 0.57 +0.6 67,609 + H281DRAFT_03561 0.73 +3.1 67,612 + H281DRAFT_03561 0.73 -0.1 67,613 - H281DRAFT_03561 0.73 -0.3 67,955 + +0.2 67,955 + +0.6 67,956 - +0.8 67,982 - -0.3 67,985 + -1.4 67,985 + -0.3 67,985 + -0.3 67,985 + -0.1 67,986 - +1.7 67,986 - -1.1 67,994 - +0.4 68,227 - H281DRAFT_03562 0.23 +1.4 68,303 - H281DRAFT_03562 0.31 -0.8 68,343 - H281DRAFT_03562 0.35 +0.0 68,362 - H281DRAFT_03562 0.37 +0.1 68,445 + H281DRAFT_03562 0.46 +1.4 68,445 + H281DRAFT_03562 0.46 +0.8 68,842 + H281DRAFT_03562 0.90 +0.3 68,843 - H281DRAFT_03562 0.90 +1.1 68,870 + +1.3 68,935 - +0.4 68,935 - +1.1 69,077 + +0.3 69,078 - +0.8 69,078 - -0.1 69,111 + -1.6 69,218 - -0.7 69,384 + H281DRAFT_03563 0.15 +0.4 69,662 + H281DRAFT_03563 0.24 +0.2 69,662 + H281DRAFT_03563 0.24 +0.1 69,663 - H281DRAFT_03563 0.24 -1.4
Or see this region's nucleotide sequence