Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03467 and H281DRAFT_03468 are separated by 363 nucleotides H281DRAFT_03468 and H281DRAFT_03469 are separated by 82 nucleotides H281DRAFT_03469 and H281DRAFT_03470 are separated by 308 nucleotides
H281DRAFT_03467: H281DRAFT_03467 - Threonine/homoserine/homoserine lactone efflux protein, at 550,691 to 551,356
_03467
H281DRAFT_03468: H281DRAFT_03468 - small multidrug resistance family-3 protein, at 551,720 to 552,040
_03468
H281DRAFT_03469: H281DRAFT_03469 - hypothetical protein, at 552,123 to 552,632
_03469
H281DRAFT_03470: H281DRAFT_03470 - kumamolisin. Serine peptidase. MEROPS family S53, at 552,941 to 554,560
_03470
Position (kb) 552
553 Strain fitness (log2 ratio) -2
-1
0
1 at 551.234 kb on + strand, within H281DRAFT_03467 at 551.235 kb on - strand, within H281DRAFT_03467 at 551.547 kb on + strand at 551.629 kb on - strand at 551.631 kb on + strand at 551.632 kb on - strand at 551.774 kb on + strand, within H281DRAFT_03468 at 551.774 kb on + strand, within H281DRAFT_03468 at 551.774 kb on + strand, within H281DRAFT_03468 at 551.775 kb on - strand, within H281DRAFT_03468 at 551.775 kb on - strand, within H281DRAFT_03468 at 551.894 kb on + strand, within H281DRAFT_03468 at 551.904 kb on - strand, within H281DRAFT_03468 at 551.915 kb on + strand, within H281DRAFT_03468 at 551.915 kb on + strand, within H281DRAFT_03468 at 551.916 kb on - strand, within H281DRAFT_03468 at 551.916 kb on - strand, within H281DRAFT_03468 at 551.916 kb on - strand, within H281DRAFT_03468 at 551.965 kb on + strand, within H281DRAFT_03468 at 551.965 kb on + strand, within H281DRAFT_03468 at 551.966 kb on - strand, within H281DRAFT_03468 at 552.142 kb on + strand at 552.238 kb on + strand, within H281DRAFT_03469 at 552.238 kb on + strand, within H281DRAFT_03469 at 552.338 kb on - strand, within H281DRAFT_03469 at 552.338 kb on - strand, within H281DRAFT_03469 at 552.460 kb on + strand, within H281DRAFT_03469 at 552.460 kb on + strand, within H281DRAFT_03469 at 552.460 kb on + strand, within H281DRAFT_03469 at 552.460 kb on + strand, within H281DRAFT_03469 at 552.461 kb on - strand, within H281DRAFT_03469 at 552.461 kb on - strand, within H281DRAFT_03469 at 552.461 kb on - strand, within H281DRAFT_03469 at 552.461 kb on - strand, within H281DRAFT_03469 at 552.617 kb on - strand at 552.684 kb on - strand at 552.684 kb on - strand at 552.684 kb on - strand at 552.684 kb on - strand at 552.981 kb on + strand at 552.982 kb on - strand at 553.149 kb on - strand, within H281DRAFT_03470 at 553.499 kb on + strand, within H281DRAFT_03470 at 553.586 kb on + strand, within H281DRAFT_03470 at 553.586 kb on + strand, within H281DRAFT_03470
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 551,234 + H281DRAFT_03467 0.82 -1.4 551,235 - H281DRAFT_03467 0.82 -1.3 551,547 + -0.3 551,629 - -0.7 551,631 + -0.3 551,632 - +0.1 551,774 + H281DRAFT_03468 0.17 -0.5 551,774 + H281DRAFT_03468 0.17 -0.1 551,774 + H281DRAFT_03468 0.17 -0.4 551,775 - H281DRAFT_03468 0.17 +0.1 551,775 - H281DRAFT_03468 0.17 -0.3 551,894 + H281DRAFT_03468 0.54 +0.7 551,904 - H281DRAFT_03468 0.57 -1.7 551,915 + H281DRAFT_03468 0.61 -0.3 551,915 + H281DRAFT_03468 0.61 -0.4 551,916 - H281DRAFT_03468 0.61 -0.4 551,916 - H281DRAFT_03468 0.61 +0.2 551,916 - H281DRAFT_03468 0.61 +1.0 551,965 + H281DRAFT_03468 0.76 -2.2 551,965 + H281DRAFT_03468 0.76 -1.2 551,966 - H281DRAFT_03468 0.77 -0.6 552,142 + +0.8 552,238 + H281DRAFT_03469 0.23 -0.2 552,238 + H281DRAFT_03469 0.23 -2.0 552,338 - H281DRAFT_03469 0.42 +1.3 552,338 - H281DRAFT_03469 0.42 +0.1 552,460 + H281DRAFT_03469 0.66 -0.1 552,460 + H281DRAFT_03469 0.66 -1.5 552,460 + H281DRAFT_03469 0.66 +0.9 552,460 + H281DRAFT_03469 0.66 +0.2 552,461 - H281DRAFT_03469 0.66 -0.2 552,461 - H281DRAFT_03469 0.66 -0.5 552,461 - H281DRAFT_03469 0.66 +0.5 552,461 - H281DRAFT_03469 0.66 +0.1 552,617 - -0.7 552,684 - -0.4 552,684 - -0.3 552,684 - -0.6 552,684 - +0.7 552,981 + -0.3 552,982 - -0.1 553,149 - H281DRAFT_03470 0.13 +0.6 553,499 + H281DRAFT_03470 0.34 -0.2 553,586 + H281DRAFT_03470 0.40 +0.6 553,586 + H281DRAFT_03470 0.40 -0.1
Or see this region's nucleotide sequence