Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03399 and H281DRAFT_03400 are separated by 24 nucleotides H281DRAFT_03400 and H281DRAFT_03401 overlap by 14 nucleotides H281DRAFT_03401 and H281DRAFT_03402 are separated by 84 nucleotides
H281DRAFT_03399: H281DRAFT_03399 - cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10), at 468,807 to 469,796
_03399
H281DRAFT_03400: H281DRAFT_03400 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10), at 469,821 to 471,218
_03400
H281DRAFT_03401: H281DRAFT_03401 - hypothetical protein, at 471,205 to 471,786
_03401
H281DRAFT_03402: H281DRAFT_03402 - hypothetical protein, at 471,871 to 472,188
_03402
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -1
0
1 at 468.857 kb on - strand at 468.862 kb on + strand at 469.307 kb on - strand, within H281DRAFT_03399 at 469.673 kb on + strand, within H281DRAFT_03399 at 469.727 kb on - strand at 469.810 kb on - strand at 469.810 kb on - strand at 469.961 kb on + strand, within H281DRAFT_03400 at 469.962 kb on - strand, within H281DRAFT_03400 at 470.089 kb on + strand, within H281DRAFT_03400 at 470.102 kb on + strand at 470.179 kb on + strand, within H281DRAFT_03400 at 470.180 kb on - strand at 470.682 kb on - strand at 471.164 kb on + strand at 471.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 468,857 - -0.4 468,862 + -0.3 469,307 - H281DRAFT_03399 0.51 +1.0 469,673 + H281DRAFT_03399 0.87 +0.1 469,727 - -0.1 469,810 - -0.5 469,810 - +0.4 469,961 + H281DRAFT_03400 0.10 +1.1 469,962 - H281DRAFT_03400 0.10 +0.4 470,089 + H281DRAFT_03400 0.19 -0.6 470,102 + +0.6 470,179 + H281DRAFT_03400 0.26 -0.8 470,180 - -0.7 470,682 - -0.3 471,164 + -0.6 471,758 + -1.2
Or see this region's nucleotide sequence