Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03390 and H281DRAFT_03391 are separated by 116 nucleotides H281DRAFT_03391 and H281DRAFT_03392 are separated by 359 nucleotides
H281DRAFT_03390: H281DRAFT_03390 - H+/Cl- antiporter ClcA, at 458,224 to 459,510
_03390
H281DRAFT_03391: H281DRAFT_03391 - DNA-binding transcriptional regulator, LysR family, at 459,627 to 460,595
_03391
H281DRAFT_03392: H281DRAFT_03392 - pyruvate dehydrogenase (quinone), at 460,955 to 462,676
_03392
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1 at 458.722 kb on + strand, within H281DRAFT_03390 at 458.864 kb on - strand, within H281DRAFT_03390 at 458.929 kb on - strand, within H281DRAFT_03390 at 459.402 kb on - strand at 459.402 kb on - strand at 459.508 kb on + strand at 459.509 kb on - strand at 459.766 kb on + strand, within H281DRAFT_03391 at 459.785 kb on + strand, within H281DRAFT_03391 at 459.785 kb on + strand, within H281DRAFT_03391 at 459.786 kb on - strand, within H281DRAFT_03391 at 459.814 kb on + strand, within H281DRAFT_03391 at 459.926 kb on + strand, within H281DRAFT_03391 at 460.399 kb on + strand, within H281DRAFT_03391 at 460.400 kb on - strand, within H281DRAFT_03391 at 460.657 kb on + strand at 460.657 kb on + strand at 460.657 kb on + strand at 460.658 kb on - strand at 460.658 kb on - strand at 460.736 kb on + strand at 460.789 kb on + strand at 460.835 kb on + strand at 460.960 kb on + strand at 460.979 kb on + strand at 461.337 kb on - strand, within H281DRAFT_03392 at 461.337 kb on - strand, within H281DRAFT_03392
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 458,722 + H281DRAFT_03390 0.39 -1.4 458,864 - H281DRAFT_03390 0.50 -1.0 458,929 - H281DRAFT_03390 0.55 -0.5 459,402 - -0.7 459,402 - -0.2 459,508 + -0.1 459,509 - -0.2 459,766 + H281DRAFT_03391 0.14 +0.7 459,785 + H281DRAFT_03391 0.16 +0.1 459,785 + H281DRAFT_03391 0.16 +0.1 459,786 - H281DRAFT_03391 0.16 -0.1 459,814 + H281DRAFT_03391 0.19 -0.9 459,926 + H281DRAFT_03391 0.31 -1.9 460,399 + H281DRAFT_03391 0.80 -0.5 460,400 - H281DRAFT_03391 0.80 -0.7 460,657 + +0.8 460,657 + -1.0 460,657 + +0.9 460,658 - -1.2 460,658 - -0.3 460,736 + +0.5 460,789 + -0.1 460,835 + +0.6 460,960 + -0.4 460,979 + -0.4 461,337 - H281DRAFT_03392 0.22 +0.1 461,337 - H281DRAFT_03392 0.22 -0.3
Or see this region's nucleotide sequence