Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03389 and H281DRAFT_03390 are separated by 182 nucleotides H281DRAFT_03390 and H281DRAFT_03391 are separated by 116 nucleotides
H281DRAFT_03389: H281DRAFT_03389 - transcriptional regulator, LysR family, at 457,109 to 458,041
_03389
H281DRAFT_03390: H281DRAFT_03390 - H+/Cl- antiporter ClcA, at 458,224 to 459,510
_03390
H281DRAFT_03391: H281DRAFT_03391 - DNA-binding transcriptional regulator, LysR family, at 459,627 to 460,595
_03391
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1 at 457.302 kb on - strand, within H281DRAFT_03389 at 457.412 kb on + strand, within H281DRAFT_03389 at 457.412 kb on + strand, within H281DRAFT_03389 at 457.601 kb on + strand, within H281DRAFT_03389 at 457.691 kb on + strand, within H281DRAFT_03389 at 457.691 kb on + strand, within H281DRAFT_03389 at 457.956 kb on - strand at 458.084 kb on - strand at 458.313 kb on + strand at 458.313 kb on + strand at 458.722 kb on + strand, within H281DRAFT_03390 at 458.864 kb on - strand, within H281DRAFT_03390 at 458.929 kb on - strand, within H281DRAFT_03390 at 459.402 kb on - strand at 459.402 kb on - strand at 459.508 kb on + strand at 459.509 kb on - strand at 459.766 kb on + strand, within H281DRAFT_03391 at 459.785 kb on + strand, within H281DRAFT_03391 at 459.785 kb on + strand, within H281DRAFT_03391 at 459.786 kb on - strand, within H281DRAFT_03391 at 459.814 kb on + strand, within H281DRAFT_03391 at 459.926 kb on + strand, within H281DRAFT_03391 at 460.399 kb on + strand, within H281DRAFT_03391 at 460.400 kb on - strand, within H281DRAFT_03391
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 457,302 - H281DRAFT_03389 0.21 -0.7 457,412 + H281DRAFT_03389 0.32 -0.1 457,412 + H281DRAFT_03389 0.32 +0.4 457,601 + H281DRAFT_03389 0.53 -0.8 457,691 + H281DRAFT_03389 0.62 -1.5 457,691 + H281DRAFT_03389 0.62 -0.0 457,956 - +0.6 458,084 - +0.2 458,313 + +0.6 458,313 + +0.4 458,722 + H281DRAFT_03390 0.39 -1.4 458,864 - H281DRAFT_03390 0.50 -1.0 458,929 - H281DRAFT_03390 0.55 -0.5 459,402 - -0.7 459,402 - -0.2 459,508 + -0.1 459,509 - -0.2 459,766 + H281DRAFT_03391 0.14 +0.7 459,785 + H281DRAFT_03391 0.16 +0.1 459,785 + H281DRAFT_03391 0.16 +0.1 459,786 - H281DRAFT_03391 0.16 -0.1 459,814 + H281DRAFT_03391 0.19 -0.9 459,926 + H281DRAFT_03391 0.31 -1.9 460,399 + H281DRAFT_03391 0.80 -0.5 460,400 - H281DRAFT_03391 0.80 -0.7
Or see this region's nucleotide sequence