Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03218 and H281DRAFT_03219 are separated by 224 nucleotides H281DRAFT_03219 and H281DRAFT_03220 are separated by 72 nucleotides
H281DRAFT_03218: H281DRAFT_03218 - transcriptional regulator, TetR family, at 265,858 to 266,568
_03218
H281DRAFT_03219: H281DRAFT_03219 - gamma-glutamylputrescine oxidase, at 266,793 to 268,082
_03219
H281DRAFT_03220: H281DRAFT_03220 - 4-hydroxy-tetrahydrodipicolinate synthase, at 268,155 to 269,087
_03220
Position (kb) 266
267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 265.845 kb on + strand at 265.847 kb on + strand at 265.847 kb on + strand at 265.848 kb on - strand at 265.965 kb on + strand, within H281DRAFT_03218 at 265.965 kb on + strand, within H281DRAFT_03218 at 266.085 kb on + strand, within H281DRAFT_03218 at 266.085 kb on + strand, within H281DRAFT_03218 at 266.135 kb on + strand, within H281DRAFT_03218 at 266.292 kb on - strand, within H281DRAFT_03218 at 266.339 kb on + strand, within H281DRAFT_03218 at 266.346 kb on - strand, within H281DRAFT_03218 at 266.446 kb on - strand, within H281DRAFT_03218 at 266.536 kb on - strand at 266.600 kb on + strand at 266.653 kb on + strand at 266.746 kb on - strand at 267.070 kb on + strand, within H281DRAFT_03219 at 267.124 kb on + strand, within H281DRAFT_03219 at 267.325 kb on + strand, within H281DRAFT_03219 at 267.325 kb on + strand, within H281DRAFT_03219 at 267.364 kb on + strand, within H281DRAFT_03219 at 267.717 kb on + strand, within H281DRAFT_03219 at 267.744 kb on + strand, within H281DRAFT_03219 at 267.745 kb on - strand at 267.805 kb on - strand, within H281DRAFT_03219 at 267.963 kb on + strand at 268.251 kb on + strand, within H281DRAFT_03220 at 268.251 kb on + strand at 268.580 kb on - strand, within H281DRAFT_03220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 265,845 + -0.7 265,847 + +0.7 265,847 + +0.2 265,848 - -0.0 265,965 + H281DRAFT_03218 0.15 -1.6 265,965 + H281DRAFT_03218 0.15 -1.1 266,085 + H281DRAFT_03218 0.32 -1.4 266,085 + H281DRAFT_03218 0.32 -0.8 266,135 + H281DRAFT_03218 0.39 -0.9 266,292 - H281DRAFT_03218 0.61 -0.3 266,339 + H281DRAFT_03218 0.68 -1.7 266,346 - H281DRAFT_03218 0.69 -1.8 266,446 - H281DRAFT_03218 0.83 +0.2 266,536 - -0.9 266,600 + -0.9 266,653 + +0.8 266,746 - -0.8 267,070 + H281DRAFT_03219 0.21 -0.0 267,124 + H281DRAFT_03219 0.26 -0.0 267,325 + H281DRAFT_03219 0.41 +0.9 267,325 + H281DRAFT_03219 0.41 +2.3 267,364 + H281DRAFT_03219 0.44 +0.2 267,717 + H281DRAFT_03219 0.72 +1.0 267,744 + H281DRAFT_03219 0.74 +0.0 267,745 - +2.0 267,805 - H281DRAFT_03219 0.78 -0.7 267,963 + +0.2 268,251 + H281DRAFT_03220 0.10 -1.5 268,251 + +0.3 268,580 - H281DRAFT_03220 0.46 +0.8
Or see this region's nucleotide sequence