Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03137 and H281DRAFT_03138 are separated by 268 nucleotides H281DRAFT_03138 and H281DRAFT_03139 are separated by 401 nucleotides
H281DRAFT_03137: H281DRAFT_03137 - putative proteasome-type protease, at 173,571 to 174,443
_03137
H281DRAFT_03138: H281DRAFT_03138 - Outer membrane protein (porin), at 174,712 to 175,914
_03138
H281DRAFT_03139: H281DRAFT_03139 - membrane protein, at 176,316 to 177,641
_03139
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1
2 at 173.958 kb on + strand, within H281DRAFT_03137 at 173.959 kb on - strand, within H281DRAFT_03137 at 174.159 kb on + strand, within H281DRAFT_03137 at 174.217 kb on - strand, within H281DRAFT_03137 at 174.217 kb on - strand, within H281DRAFT_03137 at 174.441 kb on + strand at 174.514 kb on + strand at 174.514 kb on + strand at 174.514 kb on + strand at 174.514 kb on + strand at 174.515 kb on - strand at 174.710 kb on + strand at 174.710 kb on + strand at 174.710 kb on + strand at 174.710 kb on + strand at 174.710 kb on + strand at 174.777 kb on - strand at 174.777 kb on - strand at 174.920 kb on + strand, within H281DRAFT_03138 at 174.921 kb on - strand, within H281DRAFT_03138 at 174.954 kb on - strand, within H281DRAFT_03138 at 175.077 kb on + strand, within H281DRAFT_03138 at 175.078 kb on - strand, within H281DRAFT_03138 at 175.078 kb on - strand, within H281DRAFT_03138 at 175.113 kb on - strand, within H281DRAFT_03138 at 175.113 kb on - strand, within H281DRAFT_03138 at 175.117 kb on + strand, within H281DRAFT_03138 at 175.598 kb on + strand, within H281DRAFT_03138 at 175.802 kb on + strand at 175.937 kb on - strand at 175.937 kb on - strand at 175.941 kb on + strand at 175.941 kb on + strand at 175.942 kb on - strand at 175.942 kb on - strand at 175.962 kb on + strand at 175.963 kb on - strand at 175.963 kb on - strand at 176.038 kb on + strand at 176.039 kb on - strand at 176.039 kb on - strand at 176.043 kb on - strand at 176.043 kb on - strand at 176.098 kb on + strand at 176.166 kb on + strand at 176.422 kb on + strand at 176.422 kb on + strand at 176.909 kb on - strand, within H281DRAFT_03139
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 173,958 + H281DRAFT_03137 0.44 -1.1 173,959 - H281DRAFT_03137 0.44 -0.7 174,159 + H281DRAFT_03137 0.67 +0.1 174,217 - H281DRAFT_03137 0.74 +1.8 174,217 - H281DRAFT_03137 0.74 -0.2 174,441 + +0.1 174,514 + +1.1 174,514 + +0.2 174,514 + +0.4 174,514 + -1.0 174,515 - -0.2 174,710 + -0.4 174,710 + -0.3 174,710 + -0.5 174,710 + -0.7 174,710 + -0.6 174,777 - +0.8 174,777 - -0.8 174,920 + H281DRAFT_03138 0.17 -1.1 174,921 - H281DRAFT_03138 0.17 -1.6 174,954 - H281DRAFT_03138 0.20 +0.6 175,077 + H281DRAFT_03138 0.30 -2.4 175,078 - H281DRAFT_03138 0.30 +0.2 175,078 - H281DRAFT_03138 0.30 -0.5 175,113 - H281DRAFT_03138 0.33 -2.0 175,113 - H281DRAFT_03138 0.33 -2.2 175,117 + H281DRAFT_03138 0.34 -1.2 175,598 + H281DRAFT_03138 0.74 -0.4 175,802 + +0.2 175,937 - +0.2 175,937 - -1.5 175,941 + -0.8 175,941 + -0.3 175,942 - -0.2 175,942 - -0.7 175,962 + -0.8 175,963 - -0.3 175,963 - -0.8 176,038 + -1.0 176,039 - -0.8 176,039 - -0.6 176,043 - -0.8 176,043 - -0.3 176,098 + -0.0 176,166 + -0.7 176,422 + +0.7 176,422 + -0.4 176,909 - H281DRAFT_03139 0.45 -0.9
Or see this region's nucleotide sequence