Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03132 and H281DRAFT_03133 are separated by 450 nucleotides H281DRAFT_03133 and H281DRAFT_03134 are separated by 409 nucleotides
H281DRAFT_03132: H281DRAFT_03132 - transcriptional regulator, GntR family, at 167,175 to 168,662
_03132
H281DRAFT_03133: H281DRAFT_03133 - DNA-binding protein, at 169,113 to 169,565
_03133
H281DRAFT_03134: H281DRAFT_03134 - Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily, at 169,975 to 171,384
_03134
Position (kb) 169
170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.153 kb on + strand, within H281DRAFT_03132 at 168.153 kb on + strand, within H281DRAFT_03132 at 168.351 kb on + strand, within H281DRAFT_03132 at 168.440 kb on + strand, within H281DRAFT_03132 at 168.441 kb on - strand, within H281DRAFT_03132 at 168.602 kb on + strand at 168.870 kb on + strand at 168.870 kb on + strand at 168.870 kb on + strand at 168.870 kb on + strand at 168.870 kb on + strand at 168.871 kb on - strand at 168.871 kb on - strand at 168.871 kb on - strand at 168.902 kb on - strand at 169.001 kb on - strand at 169.001 kb on - strand at 169.002 kb on + strand at 169.002 kb on + strand at 169.002 kb on + strand at 169.003 kb on - strand at 169.006 kb on + strand at 169.006 kb on + strand at 169.064 kb on + strand at 169.065 kb on - strand at 169.563 kb on + strand at 169.564 kb on - strand at 169.656 kb on - strand at 169.725 kb on + strand at 169.787 kb on - strand at 169.812 kb on + strand at 169.985 kb on - strand at 170.027 kb on - strand at 170.121 kb on + strand, within H281DRAFT_03134 at 170.273 kb on - strand, within H281DRAFT_03134 at 170.326 kb on - strand, within H281DRAFT_03134 at 170.389 kb on - strand, within H281DRAFT_03134 at 170.435 kb on - strand, within H281DRAFT_03134 at 170.435 kb on - strand, within H281DRAFT_03134 at 170.476 kb on + strand, within H281DRAFT_03134 at 170.476 kb on + strand, within H281DRAFT_03134 at 170.522 kb on + strand, within H281DRAFT_03134 at 170.528 kb on + strand, within H281DRAFT_03134
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 168,153 + H281DRAFT_03132 0.66 +0.2 168,153 + H281DRAFT_03132 0.66 +0.9 168,351 + H281DRAFT_03132 0.79 +0.8 168,440 + H281DRAFT_03132 0.85 +0.8 168,441 - H281DRAFT_03132 0.85 +2.3 168,602 + -0.6 168,870 + -0.5 168,870 + -0.0 168,870 + +0.2 168,870 + -0.8 168,870 + +2.3 168,871 - +0.2 168,871 - +0.3 168,871 - +1.2 168,902 - -0.3 169,001 - -0.3 169,001 - +1.1 169,002 + +0.7 169,002 + +1.6 169,002 + +1.2 169,003 - +1.2 169,006 + -0.4 169,006 + +0.7 169,064 + -0.3 169,065 - +0.0 169,563 + -2.2 169,564 - -1.1 169,656 - -0.6 169,725 + +1.0 169,787 - -0.6 169,812 + +0.9 169,985 - -0.5 170,027 - -0.7 170,121 + H281DRAFT_03134 0.10 +0.7 170,273 - H281DRAFT_03134 0.21 +0.1 170,326 - H281DRAFT_03134 0.25 -0.3 170,389 - H281DRAFT_03134 0.29 -0.3 170,435 - H281DRAFT_03134 0.33 -0.5 170,435 - H281DRAFT_03134 0.33 -0.1 170,476 + H281DRAFT_03134 0.36 +0.3 170,476 + H281DRAFT_03134 0.36 -0.6 170,522 + H281DRAFT_03134 0.39 -0.4 170,528 + H281DRAFT_03134 0.39 -0.0
Or see this region's nucleotide sequence