Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02920 and H281DRAFT_02921 are separated by 85 nucleotides H281DRAFT_02921 and H281DRAFT_02922 are separated by 14 nucleotides H281DRAFT_02922 and H281DRAFT_02923 are separated by 116 nucleotides H281DRAFT_02923 and H281DRAFT_02924 are separated by 23 nucleotides
H281DRAFT_02920: H281DRAFT_02920 - sodium/proton antiporter, CPA1 family, at 526,077 to 527,396
_02920
H281DRAFT_02921: H281DRAFT_02921 - Predicted membrane protein, at 527,482 to 528,054
_02921
H281DRAFT_02922: H281DRAFT_02922 - transcriptional regulator, AraC family, at 528,069 to 529,139
_02922
H281DRAFT_02923: H281DRAFT_02923 - alkylhydroperoxidase AhpD family core domain-containing protein, at 529,256 to 529,606
_02923
H281DRAFT_02924: H281DRAFT_02924 - Predicted oxidoreductase, at 529,630 to 530,682
_02924
Position (kb) 528
529
530 Strain fitness (log2 ratio) -1
0
1 at 527.238 kb on + strand, within H281DRAFT_02920 at 527.242 kb on - strand, within H281DRAFT_02920 at 527.280 kb on - strand at 527.384 kb on + strand at 527.385 kb on - strand at 527.400 kb on - strand at 527.707 kb on + strand, within H281DRAFT_02921 at 527.707 kb on + strand, within H281DRAFT_02921 at 527.707 kb on + strand, within H281DRAFT_02921 at 527.707 kb on + strand, within H281DRAFT_02921 at 527.708 kb on - strand, within H281DRAFT_02921 at 527.766 kb on - strand, within H281DRAFT_02921 at 527.800 kb on + strand, within H281DRAFT_02921 at 527.813 kb on - strand, within H281DRAFT_02921 at 528.070 kb on + strand at 528.071 kb on - strand at 528.307 kb on + strand, within H281DRAFT_02922 at 528.308 kb on - strand, within H281DRAFT_02922 at 528.308 kb on - strand, within H281DRAFT_02922 at 528.400 kb on - strand, within H281DRAFT_02922 at 529.200 kb on + strand at 529.200 kb on + strand at 529.925 kb on + strand, within H281DRAFT_02924 at 529.926 kb on - strand, within H281DRAFT_02924 at 530.117 kb on + strand, within H281DRAFT_02924 at 530.117 kb on + strand, within H281DRAFT_02924 at 530.118 kb on - strand, within H281DRAFT_02924
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 527,238 + H281DRAFT_02920 0.88 -0.9 527,242 - H281DRAFT_02920 0.88 -0.5 527,280 - -0.4 527,384 + +1.1 527,385 - +0.9 527,400 - -0.0 527,707 + H281DRAFT_02921 0.39 +0.2 527,707 + H281DRAFT_02921 0.39 +0.1 527,707 + H281DRAFT_02921 0.39 -0.1 527,707 + H281DRAFT_02921 0.39 -0.5 527,708 - H281DRAFT_02921 0.39 +0.1 527,766 - H281DRAFT_02921 0.50 +1.1 527,800 + H281DRAFT_02921 0.55 +1.0 527,813 - H281DRAFT_02921 0.58 -0.0 528,070 + -0.2 528,071 - +0.3 528,307 + H281DRAFT_02922 0.22 -0.1 528,308 - H281DRAFT_02922 0.22 -0.8 528,308 - H281DRAFT_02922 0.22 -1.1 528,400 - H281DRAFT_02922 0.31 +0.0 529,200 + +0.5 529,200 + +0.5 529,925 + H281DRAFT_02924 0.28 +0.2 529,926 - H281DRAFT_02924 0.28 -0.8 530,117 + H281DRAFT_02924 0.46 -0.1 530,117 + H281DRAFT_02924 0.46 -0.2 530,118 - H281DRAFT_02924 0.46 +0.5
Or see this region's nucleotide sequence