Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02227 and H281DRAFT_02228 are separated by 142 nucleotides H281DRAFT_02228 and H281DRAFT_02229 overlap by 4 nucleotides H281DRAFT_02229 and H281DRAFT_02230 are separated by 203 nucleotides H281DRAFT_02230 and H281DRAFT_02231 are separated by 6 nucleotides
H281DRAFT_02227: H281DRAFT_02227 - cell elongation-specific peptidoglycan biosynthesis regulator RodA, at 372,492 to 373,640
_02227
H281DRAFT_02228: H281DRAFT_02228 - Sel1 repeat-containing protein, at 373,783 to 374,484
_02228
H281DRAFT_02229: H281DRAFT_02229 - 2-dehydro-3-deoxyglucarate aldolase, at 374,481 to 375,263
_02229
H281DRAFT_02230: H281DRAFT_02230 - 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 375,467 to 375,913
_02230
H281DRAFT_02231: H281DRAFT_02231 - 7-carboxy-7-deazaguanine synthase, Cx14CxxC type, at 375,920 to 376,552
_02231
Position (kb) 374
375
376 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 373.679 kb on - strand at 373.836 kb on - strand at 373.836 kb on - strand at 373.883 kb on + strand, within H281DRAFT_02228 at 373.934 kb on + strand, within H281DRAFT_02228 at 373.935 kb on - strand, within H281DRAFT_02228 at 373.953 kb on - strand, within H281DRAFT_02228 at 373.953 kb on - strand, within H281DRAFT_02228 at 373.953 kb on - strand, within H281DRAFT_02228 at 373.965 kb on + strand, within H281DRAFT_02228 at 373.966 kb on - strand, within H281DRAFT_02228 at 374.149 kb on + strand, within H281DRAFT_02228 at 374.150 kb on + strand, within H281DRAFT_02228 at 374.150 kb on + strand, within H281DRAFT_02228 at 374.150 kb on + strand, within H281DRAFT_02228 at 374.150 kb on + strand, within H281DRAFT_02228 at 374.151 kb on - strand, within H281DRAFT_02228 at 374.151 kb on - strand, within H281DRAFT_02228 at 374.151 kb on - strand, within H281DRAFT_02228 at 374.151 kb on - strand, within H281DRAFT_02228 at 374.162 kb on + strand, within H281DRAFT_02228 at 374.163 kb on - strand, within H281DRAFT_02228 at 374.168 kb on + strand, within H281DRAFT_02228 at 374.168 kb on + strand, within H281DRAFT_02228 at 374.168 kb on + strand, within H281DRAFT_02228 at 374.169 kb on - strand, within H281DRAFT_02228 at 374.169 kb on - strand, within H281DRAFT_02228 at 374.169 kb on - strand, within H281DRAFT_02228 at 374.169 kb on - strand, within H281DRAFT_02228 at 374.169 kb on - strand, within H281DRAFT_02228 at 374.169 kb on - strand, within H281DRAFT_02228 at 374.270 kb on + strand, within H281DRAFT_02228 at 374.270 kb on + strand, within H281DRAFT_02228 at 374.271 kb on - strand, within H281DRAFT_02228 at 374.351 kb on + strand, within H281DRAFT_02228 at 374.351 kb on + strand, within H281DRAFT_02228 at 374.352 kb on - strand, within H281DRAFT_02228 at 374.553 kb on - strand at 375.420 kb on + strand at 375.420 kb on + strand at 375.420 kb on + strand at 375.420 kb on + strand at 375.431 kb on + strand at 375.556 kb on - strand, within H281DRAFT_02230 at 375.822 kb on + strand, within H281DRAFT_02230 at 375.823 kb on - strand, within H281DRAFT_02230 at 375.823 kb on - strand, within H281DRAFT_02230 at 375.823 kb on - strand, within H281DRAFT_02230 at 375.823 kb on - strand, within H281DRAFT_02230 at 375.842 kb on - strand, within H281DRAFT_02230 at 375.936 kb on + strand at 375.936 kb on + strand at 375.937 kb on - strand at 375.937 kb on - strand at 375.937 kb on - strand at 375.937 kb on - strand at 375.937 kb on - strand at 376.048 kb on - strand, within H281DRAFT_02231 at 376.244 kb on + strand, within H281DRAFT_02231 at 376.244 kb on + strand, within H281DRAFT_02231
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 373,679 - -1.0 373,836 - -0.1 373,836 - +0.9 373,883 + H281DRAFT_02228 0.14 -0.1 373,934 + H281DRAFT_02228 0.22 -0.3 373,935 - H281DRAFT_02228 0.22 -0.1 373,953 - H281DRAFT_02228 0.24 -0.1 373,953 - H281DRAFT_02228 0.24 +0.7 373,953 - H281DRAFT_02228 0.24 -0.3 373,965 + H281DRAFT_02228 0.26 -0.3 373,966 - H281DRAFT_02228 0.26 +0.4 374,149 + H281DRAFT_02228 0.52 +1.9 374,150 + H281DRAFT_02228 0.52 +0.9 374,150 + H281DRAFT_02228 0.52 +0.5 374,150 + H281DRAFT_02228 0.52 -0.5 374,150 + H281DRAFT_02228 0.52 -0.2 374,151 - H281DRAFT_02228 0.52 +0.0 374,151 - H281DRAFT_02228 0.52 -0.2 374,151 - H281DRAFT_02228 0.52 -0.0 374,151 - H281DRAFT_02228 0.52 +0.3 374,162 + H281DRAFT_02228 0.54 +0.7 374,163 - H281DRAFT_02228 0.54 -0.7 374,168 + H281DRAFT_02228 0.55 +1.3 374,168 + H281DRAFT_02228 0.55 +0.2 374,168 + H281DRAFT_02228 0.55 +0.5 374,169 - H281DRAFT_02228 0.55 +0.7 374,169 - H281DRAFT_02228 0.55 +0.3 374,169 - H281DRAFT_02228 0.55 -0.2 374,169 - H281DRAFT_02228 0.55 +0.3 374,169 - H281DRAFT_02228 0.55 -1.3 374,169 - H281DRAFT_02228 0.55 +0.4 374,270 + H281DRAFT_02228 0.69 +0.4 374,270 + H281DRAFT_02228 0.69 -0.4 374,271 - H281DRAFT_02228 0.70 +0.7 374,351 + H281DRAFT_02228 0.81 +2.9 374,351 + H281DRAFT_02228 0.81 -0.1 374,352 - H281DRAFT_02228 0.81 -0.0 374,553 - -0.8 375,420 + -0.3 375,420 + -0.3 375,420 + +0.7 375,420 + -0.2 375,431 + -0.3 375,556 - H281DRAFT_02230 0.20 -2.6 375,822 + H281DRAFT_02230 0.79 -3.0 375,823 - H281DRAFT_02230 0.80 -1.2 375,823 - H281DRAFT_02230 0.80 -4.3 375,823 - H281DRAFT_02230 0.80 -1.9 375,823 - H281DRAFT_02230 0.80 -1.3 375,842 - H281DRAFT_02230 0.84 -1.5 375,936 + -3.3 375,936 + -3.0 375,937 - -3.5 375,937 - -4.1 375,937 - -2.2 375,937 - -2.8 375,937 - -2.0 376,048 - H281DRAFT_02231 0.20 -1.5 376,244 + H281DRAFT_02231 0.51 -1.3 376,244 + H281DRAFT_02231 0.51 -3.3
Or see this region's nucleotide sequence