Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02185 and H281DRAFT_02186 overlap by 10 nucleotides H281DRAFT_02186 and H281DRAFT_02187 overlap by 28 nucleotides H281DRAFT_02187 and H281DRAFT_02188 are separated by 53 nucleotides H281DRAFT_02188 and H281DRAFT_02189 are separated by 3 nucleotides
H281DRAFT_02185: H281DRAFT_02185 - hypothetical protein, at 328,116 to 329,405
_02185
H281DRAFT_02186: H281DRAFT_02186 - hypothetical protein, at 329,396 to 330,004
_02186
H281DRAFT_02187: H281DRAFT_02187 - predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis /predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis, at 329,977 to 330,999
_02187
H281DRAFT_02188: H281DRAFT_02188 - hypothetical protein, at 331,053 to 331,793
_02188
H281DRAFT_02189: H281DRAFT_02189 - hypothetical protein, at 331,797 to 331,991
_02189
Position (kb) 329
330
331 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.200 kb on + strand, within H281DRAFT_02185 at 329.200 kb on + strand, within H281DRAFT_02185 at 329.208 kb on - strand, within H281DRAFT_02185 at 329.297 kb on + strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.298 kb on - strand at 329.302 kb on + strand at 329.303 kb on - strand at 329.303 kb on - strand at 329.416 kb on + strand at 329.416 kb on + strand at 329.417 kb on - strand at 329.417 kb on - strand at 329.417 kb on - strand at 329.417 kb on - strand at 329.440 kb on + strand at 329.440 kb on + strand at 329.441 kb on - strand at 329.525 kb on + strand, within H281DRAFT_02186 at 329.616 kb on - strand, within H281DRAFT_02186 at 329.616 kb on - strand, within H281DRAFT_02186 at 329.717 kb on + strand, within H281DRAFT_02186 at 329.717 kb on + strand, within H281DRAFT_02186 at 329.718 kb on - strand, within H281DRAFT_02186 at 329.718 kb on - strand, within H281DRAFT_02186 at 329.718 kb on - strand, within H281DRAFT_02186 at 329.718 kb on - strand, within H281DRAFT_02186 at 330.221 kb on - strand, within H281DRAFT_02187 at 330.503 kb on - strand, within H281DRAFT_02187 at 330.513 kb on + strand, within H281DRAFT_02187 at 330.514 kb on - strand, within H281DRAFT_02187 at 330.514 kb on - strand at 330.532 kb on + strand, within H281DRAFT_02187 at 330.565 kb on + strand, within H281DRAFT_02187 at 330.603 kb on - strand, within H281DRAFT_02187 at 330.730 kb on + strand, within H281DRAFT_02187 at 330.730 kb on + strand, within H281DRAFT_02187 at 330.730 kb on + strand, within H281DRAFT_02187 at 330.730 kb on + strand, within H281DRAFT_02187 at 330.731 kb on - strand, within H281DRAFT_02187 at 330.731 kb on - strand, within H281DRAFT_02187 at 330.731 kb on - strand, within H281DRAFT_02187 at 330.759 kb on + strand, within H281DRAFT_02187 at 330.759 kb on + strand, within H281DRAFT_02187 at 330.759 kb on + strand, within H281DRAFT_02187 at 330.841 kb on + strand, within H281DRAFT_02187 at 330.842 kb on - strand, within H281DRAFT_02187 at 330.842 kb on - strand, within H281DRAFT_02187 at 330.990 kb on + strand at 330.998 kb on - strand at 330.998 kb on - strand at 331.054 kb on + strand at 331.054 kb on + strand at 331.055 kb on - strand at 331.055 kb on - strand at 331.055 kb on - strand at 331.646 kb on + strand, within H281DRAFT_02188 at 331.646 kb on + strand, within H281DRAFT_02188 at 331.647 kb on - strand, within H281DRAFT_02188 at 331.647 kb on - strand, within H281DRAFT_02188 at 331.769 kb on + strand at 331.770 kb on - strand at 331.817 kb on + strand, within H281DRAFT_02189
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 329,200 + H281DRAFT_02185 0.84 -0.0 329,200 + H281DRAFT_02185 0.84 -0.4 329,208 - H281DRAFT_02185 0.85 +0.3 329,297 + -0.6 329,297 + -0.7 329,297 + +0.5 329,298 - +0.2 329,302 + +0.1 329,303 - -0.8 329,303 - +0.5 329,416 + +0.4 329,416 + +1.3 329,417 - +0.1 329,417 - +0.5 329,417 - +0.4 329,417 - +0.3 329,440 + +0.3 329,440 + +0.6 329,441 - +1.4 329,525 + H281DRAFT_02186 0.21 -0.5 329,616 - H281DRAFT_02186 0.36 -0.5 329,616 - H281DRAFT_02186 0.36 +0.4 329,717 + H281DRAFT_02186 0.53 -2.6 329,717 + H281DRAFT_02186 0.53 +0.4 329,718 - H281DRAFT_02186 0.53 -0.5 329,718 - H281DRAFT_02186 0.53 -0.6 329,718 - H281DRAFT_02186 0.53 +0.2 329,718 - H281DRAFT_02186 0.53 +0.7 330,221 - H281DRAFT_02187 0.24 -0.3 330,503 - H281DRAFT_02187 0.51 -0.4 330,513 + H281DRAFT_02187 0.52 +0.7 330,514 - H281DRAFT_02187 0.52 -0.7 330,514 - +2.1 330,532 + H281DRAFT_02187 0.54 +0.5 330,565 + H281DRAFT_02187 0.57 +0.2 330,603 - H281DRAFT_02187 0.61 +1.6 330,730 + H281DRAFT_02187 0.74 -0.6 330,730 + H281DRAFT_02187 0.74 -0.5 330,730 + H281DRAFT_02187 0.74 +0.0 330,730 + H281DRAFT_02187 0.74 +2.2 330,731 - H281DRAFT_02187 0.74 +0.1 330,731 - H281DRAFT_02187 0.74 +0.7 330,731 - H281DRAFT_02187 0.74 +1.9 330,759 + H281DRAFT_02187 0.76 -0.4 330,759 + H281DRAFT_02187 0.76 -0.5 330,759 + H281DRAFT_02187 0.76 +0.2 330,841 + H281DRAFT_02187 0.84 +0.8 330,842 - H281DRAFT_02187 0.85 +1.6 330,842 - H281DRAFT_02187 0.85 +1.6 330,990 + -0.3 330,998 - +0.9 330,998 - -0.2 331,054 + +0.9 331,054 + -1.1 331,055 - +0.5 331,055 - -0.5 331,055 - +0.3 331,646 + H281DRAFT_02188 0.80 +0.3 331,646 + H281DRAFT_02188 0.80 -0.7 331,647 - H281DRAFT_02188 0.80 -0.9 331,647 - H281DRAFT_02188 0.80 -0.7 331,769 + +0.2 331,770 - +0.7 331,817 + H281DRAFT_02189 0.10 -2.3
Or see this region's nucleotide sequence