Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02159 and H281DRAFT_02160 are separated by 235 nucleotides H281DRAFT_02160 and H281DRAFT_02161 are separated by 105 nucleotides
H281DRAFT_02159: H281DRAFT_02159 - hypothetical protein, at 298,302 to 298,964
_02159
H281DRAFT_02160: H281DRAFT_02160 - Fucose permease, at 299,200 to 300,411
_02160
H281DRAFT_02161: H281DRAFT_02161 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 300,517 to 301,662
_02161
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 298.220 kb on + strand at 298.232 kb on + strand at 298.233 kb on - strand at 298.233 kb on - strand at 298.233 kb on - strand at 298.233 kb on - strand at 298.233 kb on - strand at 298.238 kb on - strand at 298.296 kb on - strand at 298.303 kb on + strand at 298.304 kb on - strand at 298.408 kb on - strand, within H281DRAFT_02159 at 298.408 kb on - strand, within H281DRAFT_02159 at 298.408 kb on - strand, within H281DRAFT_02159 at 298.482 kb on + strand, within H281DRAFT_02159 at 298.482 kb on + strand, within H281DRAFT_02159 at 298.482 kb on + strand, within H281DRAFT_02159 at 298.483 kb on - strand, within H281DRAFT_02159 at 298.483 kb on - strand, within H281DRAFT_02159 at 298.483 kb on - strand, within H281DRAFT_02159 at 298.573 kb on + strand, within H281DRAFT_02159 at 298.573 kb on + strand, within H281DRAFT_02159 at 298.574 kb on - strand, within H281DRAFT_02159 at 298.574 kb on - strand, within H281DRAFT_02159 at 298.608 kb on - strand, within H281DRAFT_02159 at 298.608 kb on - strand, within H281DRAFT_02159 at 298.628 kb on - strand, within H281DRAFT_02159 at 298.648 kb on + strand, within H281DRAFT_02159 at 298.648 kb on + strand, within H281DRAFT_02159 at 298.731 kb on + strand, within H281DRAFT_02159 at 298.731 kb on + strand, within H281DRAFT_02159 at 298.732 kb on - strand, within H281DRAFT_02159 at 298.732 kb on - strand, within H281DRAFT_02159 at 298.732 kb on - strand, within H281DRAFT_02159 at 298.732 kb on - strand, within H281DRAFT_02159 at 298.796 kb on + strand, within H281DRAFT_02159 at 298.797 kb on - strand, within H281DRAFT_02159 at 298.797 kb on - strand, within H281DRAFT_02159 at 298.815 kb on + strand, within H281DRAFT_02159 at 298.816 kb on - strand, within H281DRAFT_02159 at 298.911 kb on - strand at 298.925 kb on + strand at 298.926 kb on - strand at 298.926 kb on - strand at 298.926 kb on - strand at 299.038 kb on - strand at 299.122 kb on + strand at 299.122 kb on + strand at 299.123 kb on - strand at 299.123 kb on - strand at 299.123 kb on - strand at 299.123 kb on - strand at 299.123 kb on - strand at 299.123 kb on - strand at 299.141 kb on - strand at 299.257 kb on + strand at 299.257 kb on + strand at 299.257 kb on + strand at 299.258 kb on - strand at 299.258 kb on - strand at 299.258 kb on - strand at 299.370 kb on + strand, within H281DRAFT_02160 at 299.370 kb on + strand, within H281DRAFT_02160 at 299.371 kb on - strand, within H281DRAFT_02160 at 299.533 kb on + strand, within H281DRAFT_02160 at 299.534 kb on - strand, within H281DRAFT_02160 at 299.536 kb on + strand, within H281DRAFT_02160 at 299.811 kb on - strand, within H281DRAFT_02160 at 299.926 kb on + strand, within H281DRAFT_02160 at 299.927 kb on - strand, within H281DRAFT_02160 at 299.927 kb on - strand, within H281DRAFT_02160 at 299.927 kb on - strand, within H281DRAFT_02160 at 299.944 kb on + strand, within H281DRAFT_02160 at 299.944 kb on + strand, within H281DRAFT_02160 at 299.945 kb on - strand, within H281DRAFT_02160 at 299.945 kb on - strand, within H281DRAFT_02160 at 299.945 kb on - strand, within H281DRAFT_02160 at 299.945 kb on - strand, within H281DRAFT_02160 at 299.945 kb on - strand, within H281DRAFT_02160 at 299.945 kb on - strand, within H281DRAFT_02160 at 299.945 kb on - strand, within H281DRAFT_02160 at 299.946 kb on + strand, within H281DRAFT_02160 at 299.947 kb on - strand, within H281DRAFT_02160 at 299.947 kb on - strand, within H281DRAFT_02160 at 299.947 kb on - strand, within H281DRAFT_02160 at 299.992 kb on + strand, within H281DRAFT_02160 at 299.992 kb on + strand, within H281DRAFT_02160 at 299.993 kb on - strand, within H281DRAFT_02160 at 299.993 kb on - strand, within H281DRAFT_02160 at 300.146 kb on + strand, within H281DRAFT_02160 at 300.183 kb on + strand, within H281DRAFT_02160 at 300.218 kb on + strand, within H281DRAFT_02160 at 300.268 kb on + strand, within H281DRAFT_02160 at 300.389 kb on + strand at 300.389 kb on + strand at 300.390 kb on - strand at 300.409 kb on + strand at 300.410 kb on - strand at 300.470 kb on + strand at 300.471 kb on - strand at 300.471 kb on - strand at 300.507 kb on - strand at 300.507 kb on - strand at 300.507 kb on - strand at 300.518 kb on + strand at 300.518 kb on + strand at 300.518 kb on + strand at 300.518 kb on + strand at 300.560 kb on + strand at 300.560 kb on + strand at 300.560 kb on + strand at 300.561 kb on - strand at 300.561 kb on - strand at 300.561 kb on - strand at 300.561 kb on - strand at 300.561 kb on - strand at 300.567 kb on - strand at 300.635 kb on + strand, within H281DRAFT_02161 at 300.635 kb on + strand, within H281DRAFT_02161 at 300.713 kb on + strand, within H281DRAFT_02161 at 300.713 kb on + strand, within H281DRAFT_02161 at 300.714 kb on - strand, within H281DRAFT_02161 at 300.714 kb on - strand, within H281DRAFT_02161 at 300.714 kb on - strand, within H281DRAFT_02161 at 300.714 kb on - strand, within H281DRAFT_02161 at 300.714 kb on - strand, within H281DRAFT_02161 at 300.714 kb on - strand, within H281DRAFT_02161 at 300.725 kb on + strand at 300.741 kb on - strand, within H281DRAFT_02161 at 300.773 kb on + strand, within H281DRAFT_02161 at 300.773 kb on + strand, within H281DRAFT_02161 at 300.774 kb on - strand, within H281DRAFT_02161 at 300.974 kb on + strand, within H281DRAFT_02161 at 300.974 kb on + strand, within H281DRAFT_02161 at 300.975 kb on - strand, within H281DRAFT_02161 at 300.975 kb on - strand, within H281DRAFT_02161 at 300.975 kb on - strand, within H281DRAFT_02161 at 301.122 kb on - strand, within H281DRAFT_02161 at 301.178 kb on + strand, within H281DRAFT_02161 at 301.179 kb on - strand, within H281DRAFT_02161 at 301.179 kb on - strand, within H281DRAFT_02161 at 301.179 kb on - strand, within H281DRAFT_02161 at 301.182 kb on + strand, within H281DRAFT_02161 at 301.183 kb on - strand, within H281DRAFT_02161 at 301.226 kb on + strand, within H281DRAFT_02161 at 301.304 kb on + strand, within H281DRAFT_02161 at 301.305 kb on - strand, within H281DRAFT_02161 at 301.305 kb on - strand, within H281DRAFT_02161
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 298,220 + -1.8 298,232 + +1.6 298,233 - +0.4 298,233 - +0.8 298,233 - +0.4 298,233 - +0.9 298,233 - +1.2 298,238 - +0.2 298,296 - +1.0 298,303 + -0.7 298,304 - +1.0 298,408 - H281DRAFT_02159 0.16 +0.5 298,408 - H281DRAFT_02159 0.16 -1.9 298,408 - H281DRAFT_02159 0.16 -0.4 298,482 + H281DRAFT_02159 0.27 -0.7 298,482 + H281DRAFT_02159 0.27 +2.1 298,482 + H281DRAFT_02159 0.27 -0.5 298,483 - H281DRAFT_02159 0.27 +1.2 298,483 - H281DRAFT_02159 0.27 +0.4 298,483 - H281DRAFT_02159 0.27 +0.8 298,573 + H281DRAFT_02159 0.41 -2.0 298,573 + H281DRAFT_02159 0.41 +2.0 298,574 - H281DRAFT_02159 0.41 -0.2 298,574 - H281DRAFT_02159 0.41 +0.1 298,608 - H281DRAFT_02159 0.46 +1.7 298,608 - H281DRAFT_02159 0.46 -0.6 298,628 - H281DRAFT_02159 0.49 -0.2 298,648 + H281DRAFT_02159 0.52 +0.6 298,648 + H281DRAFT_02159 0.52 -3.1 298,731 + H281DRAFT_02159 0.65 -1.0 298,731 + H281DRAFT_02159 0.65 -0.8 298,732 - H281DRAFT_02159 0.65 +0.9 298,732 - H281DRAFT_02159 0.65 +0.4 298,732 - H281DRAFT_02159 0.65 +0.3 298,732 - H281DRAFT_02159 0.65 -0.1 298,796 + H281DRAFT_02159 0.75 -1.1 298,797 - H281DRAFT_02159 0.75 +0.9 298,797 - H281DRAFT_02159 0.75 +0.3 298,815 + H281DRAFT_02159 0.77 -0.4 298,816 - H281DRAFT_02159 0.78 +2.0 298,911 - +0.4 298,925 + +1.0 298,926 - +1.9 298,926 - -1.0 298,926 - +1.9 299,038 - +0.5 299,122 + -0.7 299,122 + -1.0 299,123 - +1.2 299,123 - +1.2 299,123 - +1.7 299,123 - +1.2 299,123 - +0.8 299,123 - +0.8 299,141 - +0.5 299,257 + -1.3 299,257 + -0.7 299,257 + -0.1 299,258 - +1.9 299,258 - +1.5 299,258 - +0.9 299,370 + H281DRAFT_02160 0.14 +0.4 299,370 + H281DRAFT_02160 0.14 -1.0 299,371 - H281DRAFT_02160 0.14 +0.9 299,533 + H281DRAFT_02160 0.27 -1.2 299,534 - H281DRAFT_02160 0.28 +0.3 299,536 + H281DRAFT_02160 0.28 -1.1 299,811 - H281DRAFT_02160 0.50 -0.9 299,926 + H281DRAFT_02160 0.60 -0.3 299,927 - H281DRAFT_02160 0.60 +0.4 299,927 - H281DRAFT_02160 0.60 +0.5 299,927 - H281DRAFT_02160 0.60 +0.3 299,944 + H281DRAFT_02160 0.61 +0.8 299,944 + H281DRAFT_02160 0.61 +0.6 299,945 - H281DRAFT_02160 0.61 +0.4 299,945 - H281DRAFT_02160 0.61 +1.3 299,945 - H281DRAFT_02160 0.61 -0.2 299,945 - H281DRAFT_02160 0.61 -1.3 299,945 - H281DRAFT_02160 0.61 -0.1 299,945 - H281DRAFT_02160 0.61 +1.2 299,945 - H281DRAFT_02160 0.61 -0.4 299,946 + H281DRAFT_02160 0.62 +1.1 299,947 - H281DRAFT_02160 0.62 +0.3 299,947 - H281DRAFT_02160 0.62 -1.3 299,947 - H281DRAFT_02160 0.62 +0.5 299,992 + H281DRAFT_02160 0.65 +0.4 299,992 + H281DRAFT_02160 0.65 -0.2 299,993 - H281DRAFT_02160 0.65 +0.2 299,993 - H281DRAFT_02160 0.65 +0.2 300,146 + H281DRAFT_02160 0.78 -1.9 300,183 + H281DRAFT_02160 0.81 -0.6 300,218 + H281DRAFT_02160 0.84 +0.1 300,268 + H281DRAFT_02160 0.88 -0.2 300,389 + -1.9 300,389 + +2.6 300,390 - -0.1 300,409 + +0.6 300,410 - -0.7 300,470 + +0.5 300,471 - +0.0 300,471 - -1.1 300,507 - -1.3 300,507 - -1.2 300,507 - -0.8 300,518 + -0.2 300,518 + +1.3 300,518 + -0.8 300,518 + -0.8 300,560 + -1.9 300,560 + -1.2 300,560 + -1.9 300,561 - -3.0 300,561 - -0.4 300,561 - -0.4 300,561 - -1.0 300,561 - -1.3 300,567 - -0.6 300,635 + H281DRAFT_02161 0.10 -2.9 300,635 + H281DRAFT_02161 0.10 -1.6 300,713 + H281DRAFT_02161 0.17 -0.5 300,713 + H281DRAFT_02161 0.17 -1.8 300,714 - H281DRAFT_02161 0.17 -1.1 300,714 - H281DRAFT_02161 0.17 -1.2 300,714 - H281DRAFT_02161 0.17 -0.5 300,714 - H281DRAFT_02161 0.17 -1.3 300,714 - H281DRAFT_02161 0.17 -1.1 300,714 - H281DRAFT_02161 0.17 -0.9 300,725 + +0.3 300,741 - H281DRAFT_02161 0.20 -1.5 300,773 + H281DRAFT_02161 0.22 -1.1 300,773 + H281DRAFT_02161 0.22 -2.0 300,774 - H281DRAFT_02161 0.22 +0.0 300,974 + H281DRAFT_02161 0.40 -0.7 300,974 + H281DRAFT_02161 0.40 -1.3 300,975 - H281DRAFT_02161 0.40 -1.3 300,975 - H281DRAFT_02161 0.40 -0.7 300,975 - H281DRAFT_02161 0.40 -1.1 301,122 - H281DRAFT_02161 0.53 -1.2 301,178 + H281DRAFT_02161 0.58 -1.1 301,179 - H281DRAFT_02161 0.58 -0.5 301,179 - H281DRAFT_02161 0.58 -0.9 301,179 - H281DRAFT_02161 0.58 -1.3 301,182 + H281DRAFT_02161 0.58 -0.7 301,183 - H281DRAFT_02161 0.58 -0.3 301,226 + H281DRAFT_02161 0.62 -0.9 301,304 + H281DRAFT_02161 0.69 -1.4 301,305 - H281DRAFT_02161 0.69 -0.7 301,305 - H281DRAFT_02161 0.69 -1.1
Or see this region's nucleotide sequence