Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02139

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02138 and H281DRAFT_02139 overlap by 4 nucleotidesH281DRAFT_02139 and H281DRAFT_02140 are separated by 1 nucleotides H281DRAFT_02138: H281DRAFT_02138 - type I restriction enzyme, S subunit, at 276,058 to 277,431 _02138 H281DRAFT_02139: H281DRAFT_02139 - type I restriction enzyme, R subunit, at 277,428 to 280,721 _02139 H281DRAFT_02140: H281DRAFT_02140 - hypothetical protein, at 280,723 to 281,451 _02140 Position (kb) 277 278 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 276.458 kb on + strand, within H281DRAFT_02138at 276.459 kb on - strand, within H281DRAFT_02138at 276.624 kb on + strand, within H281DRAFT_02138at 276.624 kb on + strand, within H281DRAFT_02138at 276.625 kb on - strand, within H281DRAFT_02138at 276.625 kb on - strand, within H281DRAFT_02138at 276.643 kb on + strand, within H281DRAFT_02138at 276.643 kb on + strand, within H281DRAFT_02138at 276.644 kb on - strand, within H281DRAFT_02138at 276.834 kb on - strand, within H281DRAFT_02138at 276.834 kb on - strand, within H281DRAFT_02138at 276.858 kb on + strand, within H281DRAFT_02138at 276.859 kb on - strand, within H281DRAFT_02138at 276.859 kb on - strand, within H281DRAFT_02138at 276.905 kb on + strand, within H281DRAFT_02138at 276.906 kb on - strand, within H281DRAFT_02138at 276.922 kb on + strand, within H281DRAFT_02138at 276.923 kb on - strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.967 kb on + strand, within H281DRAFT_02138at 276.967 kb on + strand, within H281DRAFT_02138at 276.991 kb on + strand, within H281DRAFT_02138at 276.992 kb on - strand, within H281DRAFT_02138at 277.040 kb on + strand, within H281DRAFT_02138at 277.040 kb on + strand, within H281DRAFT_02138at 277.041 kb on - strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.048 kb on + strand, within H281DRAFT_02138at 277.048 kb on + strand, within H281DRAFT_02138at 277.075 kb on + strand, within H281DRAFT_02138at 277.075 kb on + strand, within H281DRAFT_02138at 277.075 kb on + strand, within H281DRAFT_02138at 277.076 kb on - strand, within H281DRAFT_02138at 277.076 kb on - strand, within H281DRAFT_02138at 277.132 kb on + strand, within H281DRAFT_02138at 277.458 kb on + strandat 277.459 kb on - strandat 277.480 kb on + strandat 277.608 kb on + strandat 277.608 kb on + strandat 277.609 kb on - strandat 277.716 kb on + strandat 277.740 kb on - strandat 277.740 kb on - strandat 277.740 kb on - strandat 277.740 kb on - strandat 277.793 kb on - strand, within H281DRAFT_02139at 277.896 kb on + strand, within H281DRAFT_02139at 277.896 kb on + strand, within H281DRAFT_02139at 277.897 kb on - strand, within H281DRAFT_02139at 278.227 kb on - strand, within H281DRAFT_02139at 278.305 kb on + strand, within H281DRAFT_02139at 278.306 kb on - strand, within H281DRAFT_02139at 278.306 kb on - strand, within H281DRAFT_02139at 278.374 kb on + strand, within H281DRAFT_02139at 278.581 kb on + strand, within H281DRAFT_02139at 278.582 kb on - strand, within H281DRAFT_02139at 278.582 kb on - strand, within H281DRAFT_02139at 278.772 kb on + strand, within H281DRAFT_02139at 278.772 kb on + strand, within H281DRAFT_02139at 278.773 kb on - strand, within H281DRAFT_02139at 278.773 kb on - strand, within H281DRAFT_02139at 278.773 kb on - strand, within H281DRAFT_02139at 278.773 kb on - strand, within H281DRAFT_02139at 278.774 kb on + strand, within H281DRAFT_02139at 278.875 kb on - strand, within H281DRAFT_02139at 278.875 kb on - strand, within H281DRAFT_02139at 278.875 kb on - strand, within H281DRAFT_02139at 278.949 kb on + strand, within H281DRAFT_02139at 278.949 kb on + strand, within H281DRAFT_02139at 278.997 kb on + strand, within H281DRAFT_02139at 279.202 kb on + strand, within H281DRAFT_02139at 279.202 kb on + strand, within H281DRAFT_02139at 279.202 kb on + strand, within H281DRAFT_02139at 279.202 kb on + strand, within H281DRAFT_02139at 279.203 kb on - strand, within H281DRAFT_02139at 279.267 kb on + strand, within H281DRAFT_02139at 279.268 kb on - strand, within H281DRAFT_02139at 279.344 kb on - strand, within H281DRAFT_02139at 279.392 kb on - strand, within H281DRAFT_02139at 279.392 kb on - strand, within H281DRAFT_02139at 279.392 kb on - strand, within H281DRAFT_02139at 279.519 kb on + strand, within H281DRAFT_02139at 279.520 kb on - strand, within H281DRAFT_02139at 279.520 kb on - strand, within H281DRAFT_02139at 279.520 kb on - strand, within H281DRAFT_02139at 279.521 kb on + strand, within H281DRAFT_02139at 279.571 kb on + strand, within H281DRAFT_02139at 279.657 kb on + strand, within H281DRAFT_02139at 279.657 kb on + strand, within H281DRAFT_02139at 279.704 kb on + strand, within H281DRAFT_02139at 279.717 kb on + strand, within H281DRAFT_02139at 279.738 kb on + strand, within H281DRAFT_02139at 279.739 kb on - strand, within H281DRAFT_02139at 279.739 kb on - strand, within H281DRAFT_02139at 279.829 kb on + strand, within H281DRAFT_02139at 279.829 kb on + strand, within H281DRAFT_02139at 279.841 kb on - strand, within H281DRAFT_02139at 279.900 kb on + strand, within H281DRAFT_02139at 279.900 kb on + strand, within H281DRAFT_02139at 279.900 kb on + strand, within H281DRAFT_02139at 279.900 kb on + strand, within H281DRAFT_02139at 279.901 kb on - strand, within H281DRAFT_02139at 279.901 kb on - strand, within H281DRAFT_02139at 279.901 kb on - strand, within H281DRAFT_02139at 279.903 kb on - strand, within H281DRAFT_02139at 279.953 kb on + strand, within H281DRAFT_02139at 279.953 kb on + strand, within H281DRAFT_02139at 279.954 kb on - strand, within H281DRAFT_02139at 279.999 kb on + strand, within H281DRAFT_02139at 279.999 kb on + strand, within H281DRAFT_02139at 280.001 kb on + strand, within H281DRAFT_02139at 280.001 kb on + strand, within H281DRAFT_02139at 280.002 kb on - strand, within H281DRAFT_02139at 280.002 kb on - strand, within H281DRAFT_02139at 280.002 kb on - strand, within H281DRAFT_02139at 280.072 kb on - strand, within H281DRAFT_02139at 280.072 kb on - strand, within H281DRAFT_02139at 280.117 kb on + strand, within H281DRAFT_02139at 280.152 kb on + strand, within H281DRAFT_02139at 280.152 kb on + strand, within H281DRAFT_02139at 280.373 kb on + strand, within H281DRAFT_02139at 280.374 kb on - strand, within H281DRAFT_02139at 280.722 kb on + strandat 280.732 kb on + strandat 280.732 kb on + strandat 280.733 kb on - strandat 280.733 kb on - strandat 280.733 kb on - strandat 280.733 kb on - strandat 280.758 kb on + strandat 280.758 kb on + strandat 280.758 kb on + strandat 280.759 kb on - strandat 280.794 kb on + strandat 280.802 kb on + strand, within H281DRAFT_02140at 280.947 kb on - strand, within H281DRAFT_02140at 280.947 kb on - strand, within H281DRAFT_02140at 280.947 kb on - strand, within H281DRAFT_02140at 280.960 kb on + strand, within H281DRAFT_02140at 280.961 kb on - strand, within H281DRAFT_02140at 280.984 kb on + strand, within H281DRAFT_02140at 280.984 kb on + strand, within H281DRAFT_02140at 280.985 kb on - strand, within H281DRAFT_02140at 281.104 kb on + strand, within H281DRAFT_02140at 281.105 kb on - strand, within H281DRAFT_02140at 281.105 kb on - strand, within H281DRAFT_02140at 281.105 kb on - strand, within H281DRAFT_02140at 281.105 kb on - strand, within H281DRAFT_02140at 281.292 kb on + strand, within H281DRAFT_02140at 281.308 kb on + strand, within H281DRAFT_02140at 281.308 kb on + strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.309 kb on - strand, within H281DRAFT_02140at 281.365 kb on + strand, within H281DRAFT_02140at 281.421 kb on + strandat 281.438 kb on + strandat 281.452 kb on + strandat 281.452 kb on + strandat 281.452 kb on + strandat 281.453 kb on - strandat 281.597 kb on + strandat 281.598 kb on - strandat 281.598 kb on - strandat 281.637 kb on + strandat 281.638 kb on - strandat 281.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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276,458 + H281DRAFT_02138 0.29 +0.2
276,459 - H281DRAFT_02138 0.29 -0.9
276,624 + H281DRAFT_02138 0.41 +1.0
276,624 + H281DRAFT_02138 0.41 +0.6
276,625 - H281DRAFT_02138 0.41 -0.7
276,625 - H281DRAFT_02138 0.41 -2.3
276,643 + H281DRAFT_02138 0.43 -1.0
276,643 + H281DRAFT_02138 0.43 +0.4
276,644 - H281DRAFT_02138 0.43 -0.6
276,834 - H281DRAFT_02138 0.56 +0.4
276,834 - H281DRAFT_02138 0.56 -0.9
276,858 + H281DRAFT_02138 0.58 +0.1
276,859 - H281DRAFT_02138 0.58 +0.0
276,859 - H281DRAFT_02138 0.58 +0.5
276,905 + H281DRAFT_02138 0.62 -1.3
276,906 - H281DRAFT_02138 0.62 -0.2
276,922 + H281DRAFT_02138 0.63 -0.0
276,923 - H281DRAFT_02138 0.63 -1.4
276,961 + H281DRAFT_02138 0.66 -1.4
276,961 + H281DRAFT_02138 0.66 -0.7
276,961 + H281DRAFT_02138 0.66 +0.8
276,961 + H281DRAFT_02138 0.66 +0.4
276,967 + H281DRAFT_02138 0.66 +0.3
276,967 + H281DRAFT_02138 0.66 -0.6
276,991 + H281DRAFT_02138 0.68 -0.3
276,992 - H281DRAFT_02138 0.68 +0.5
277,040 + H281DRAFT_02138 0.71 -0.4
277,040 + H281DRAFT_02138 0.71 +1.0
277,041 - H281DRAFT_02138 0.72 +0.0
277,043 + H281DRAFT_02138 0.72 +0.2
277,043 + H281DRAFT_02138 0.72 -0.7
277,043 + H281DRAFT_02138 0.72 -0.3
277,043 + H281DRAFT_02138 0.72 +1.0
277,043 + H281DRAFT_02138 0.72 +0.5
277,044 - H281DRAFT_02138 0.72 -0.2
277,044 - H281DRAFT_02138 0.72 -0.5
277,044 - H281DRAFT_02138 0.72 -0.6
277,044 - H281DRAFT_02138 0.72 -0.1
277,048 + H281DRAFT_02138 0.72 -0.4
277,048 + H281DRAFT_02138 0.72 -1.5
277,075 + H281DRAFT_02138 0.74 +1.0
277,075 + H281DRAFT_02138 0.74 +0.5
277,075 + H281DRAFT_02138 0.74 -1.5
277,076 - H281DRAFT_02138 0.74 -0.8
277,076 - H281DRAFT_02138 0.74 -0.7
277,132 + H281DRAFT_02138 0.78 -0.2
277,458 + -0.4
277,459 - -2.1
277,480 + -1.1
277,608 + +1.1
277,608 + +1.0
277,609 - +0.9
277,716 + -0.6
277,740 - -0.1
277,740 - -0.3
277,740 - +0.1
277,740 - -2.5
277,793 - H281DRAFT_02139 0.11 -0.5
277,896 + H281DRAFT_02139 0.14 -0.7
277,896 + H281DRAFT_02139 0.14 +0.4
277,897 - H281DRAFT_02139 0.14 -1.1
278,227 - H281DRAFT_02139 0.24 -0.5
278,305 + H281DRAFT_02139 0.27 +3.5
278,306 - H281DRAFT_02139 0.27 -0.5
278,306 - H281DRAFT_02139 0.27 -1.3
278,374 + H281DRAFT_02139 0.29 +0.1
278,581 + H281DRAFT_02139 0.35 -0.6
278,582 - H281DRAFT_02139 0.35 +0.7
278,582 - H281DRAFT_02139 0.35 -0.7
278,772 + H281DRAFT_02139 0.41 +0.5
278,772 + H281DRAFT_02139 0.41 -0.8
278,773 - H281DRAFT_02139 0.41 -0.6
278,773 - H281DRAFT_02139 0.41 +0.2
278,773 - H281DRAFT_02139 0.41 +1.0
278,773 - H281DRAFT_02139 0.41 -1.0
278,774 + H281DRAFT_02139 0.41 -0.4
278,875 - H281DRAFT_02139 0.44 +2.5
278,875 - H281DRAFT_02139 0.44 +0.4
278,875 - H281DRAFT_02139 0.44 -1.0
278,949 + H281DRAFT_02139 0.46 -0.0
278,949 + H281DRAFT_02139 0.46 +0.1
278,997 + H281DRAFT_02139 0.48 -0.4
279,202 + H281DRAFT_02139 0.54 -0.5
279,202 + H281DRAFT_02139 0.54 +0.3
279,202 + H281DRAFT_02139 0.54 +0.5
279,202 + H281DRAFT_02139 0.54 -0.6
279,203 - H281DRAFT_02139 0.54 -0.9
279,267 + H281DRAFT_02139 0.56 -0.7
279,268 - H281DRAFT_02139 0.56 -0.0
279,344 - H281DRAFT_02139 0.58 -0.7
279,392 - H281DRAFT_02139 0.60 -1.9
279,392 - H281DRAFT_02139 0.60 -0.9
279,392 - H281DRAFT_02139 0.60 -2.4
279,519 + H281DRAFT_02139 0.63 -1.8
279,520 - H281DRAFT_02139 0.64 +0.2
279,520 - H281DRAFT_02139 0.64 +0.1
279,520 - H281DRAFT_02139 0.64 -0.3
279,521 + H281DRAFT_02139 0.64 -1.1
279,571 + H281DRAFT_02139 0.65 -1.0
279,657 + H281DRAFT_02139 0.68 +2.5
279,657 + H281DRAFT_02139 0.68 -0.2
279,704 + H281DRAFT_02139 0.69 +0.3
279,717 + H281DRAFT_02139 0.69 -0.6
279,738 + H281DRAFT_02139 0.70 -1.3
279,739 - H281DRAFT_02139 0.70 -1.7
279,739 - H281DRAFT_02139 0.70 -0.6
279,829 + H281DRAFT_02139 0.73 -0.7
279,829 + H281DRAFT_02139 0.73 -0.3
279,841 - H281DRAFT_02139 0.73 +0.1
279,900 + H281DRAFT_02139 0.75 -1.1
279,900 + H281DRAFT_02139 0.75 -0.3
279,900 + H281DRAFT_02139 0.75 +0.1
279,900 + H281DRAFT_02139 0.75 -0.2
279,901 - H281DRAFT_02139 0.75 -1.1
279,901 - H281DRAFT_02139 0.75 -0.5
279,901 - H281DRAFT_02139 0.75 -0.3
279,903 - H281DRAFT_02139 0.75 -1.9
279,953 + H281DRAFT_02139 0.77 -0.5
279,953 + H281DRAFT_02139 0.77 -2.1
279,954 - H281DRAFT_02139 0.77 -2.9
279,999 + H281DRAFT_02139 0.78 -0.8
279,999 + H281DRAFT_02139 0.78 -1.6
280,001 + H281DRAFT_02139 0.78 -0.7
280,001 + H281DRAFT_02139 0.78 +2.2
280,002 - H281DRAFT_02139 0.78 -1.8
280,002 - H281DRAFT_02139 0.78 +0.4
280,002 - H281DRAFT_02139 0.78 -1.1
280,072 - H281DRAFT_02139 0.80 +1.3
280,072 - H281DRAFT_02139 0.80 +0.4
280,117 + H281DRAFT_02139 0.82 -0.7
280,152 + H281DRAFT_02139 0.83 -0.1
280,152 + H281DRAFT_02139 0.83 +1.0
280,373 + H281DRAFT_02139 0.89 +0.6
280,374 - H281DRAFT_02139 0.89 -1.9
280,722 + +0.6
280,732 + -0.6
280,732 + +2.1
280,733 - -1.2
280,733 - -0.3
280,733 - -0.3
280,733 - -0.5
280,758 + -1.0
280,758 + +0.4
280,758 + +0.8
280,759 - +0.5
280,794 + -1.7
280,802 + H281DRAFT_02140 0.11 -1.7
280,947 - H281DRAFT_02140 0.31 -0.3
280,947 - H281DRAFT_02140 0.31 +0.5
280,947 - H281DRAFT_02140 0.31 -0.2
280,960 + H281DRAFT_02140 0.33 +0.1
280,961 - H281DRAFT_02140 0.33 -0.0
280,984 + H281DRAFT_02140 0.36 +0.4
280,984 + H281DRAFT_02140 0.36 -1.0
280,985 - H281DRAFT_02140 0.36 +1.3
281,104 + H281DRAFT_02140 0.52 -0.0
281,105 - H281DRAFT_02140 0.52 -1.3
281,105 - H281DRAFT_02140 0.52 +0.2
281,105 - H281DRAFT_02140 0.52 +0.5
281,105 - H281DRAFT_02140 0.52 +0.7
281,292 + H281DRAFT_02140 0.78 -1.1
281,308 + H281DRAFT_02140 0.80 +1.3
281,308 + H281DRAFT_02140 0.80 -0.6
281,309 - H281DRAFT_02140 0.80 +0.9
281,309 - H281DRAFT_02140 0.80 -0.0
281,309 - H281DRAFT_02140 0.80 -0.6
281,309 - H281DRAFT_02140 0.80 +0.2
281,309 - H281DRAFT_02140 0.80 -0.3
281,365 + H281DRAFT_02140 0.88 -0.2
281,421 + +1.1
281,438 + -0.3
281,452 + +0.1
281,452 + +0.0
281,452 + +0.2
281,453 - +0.9
281,597 + +0.1
281,598 - +1.1
281,598 - +0.9
281,637 + -0.1
281,638 - -1.1
281,659 - +0.6

Or see this region's nucleotide sequence