Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02129 and H281DRAFT_02130 are separated by 437 nucleotides H281DRAFT_02130 and H281DRAFT_02131 are separated by 877 nucleotides
H281DRAFT_02129: H281DRAFT_02129 - diguanylate cyclase (GGDEF) domain-containing protein, at 263,374 to 264,912
_02129
H281DRAFT_02130: H281DRAFT_02130 - methyl-accepting chemotaxis sensory transducer, at 265,350 to 267,179
_02130
H281DRAFT_02131: H281DRAFT_02131 - hypothetical protein, at 268,057 to 269,271
_02131
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -1
0
1
2 at 264.468 kb on - strand, within H281DRAFT_02129 at 264.524 kb on + strand, within H281DRAFT_02129 at 264.525 kb on - strand, within H281DRAFT_02129 at 264.525 kb on - strand, within H281DRAFT_02129 at 264.564 kb on + strand, within H281DRAFT_02129 at 264.564 kb on + strand, within H281DRAFT_02129 at 264.565 kb on - strand, within H281DRAFT_02129 at 264.566 kb on + strand, within H281DRAFT_02129 at 264.567 kb on - strand, within H281DRAFT_02129 at 264.701 kb on - strand, within H281DRAFT_02129 at 264.713 kb on + strand, within H281DRAFT_02129 at 264.714 kb on - strand, within H281DRAFT_02129 at 264.714 kb on - strand, within H281DRAFT_02129 at 264.714 kb on - strand, within H281DRAFT_02129 at 264.714 kb on - strand, within H281DRAFT_02129 at 264.714 kb on - strand, within H281DRAFT_02129 at 264.982 kb on + strand at 264.983 kb on - strand at 264.983 kb on - strand at 265.026 kb on + strand at 265.033 kb on + strand at 265.033 kb on + strand at 265.089 kb on + strand at 265.089 kb on + strand at 265.202 kb on + strand at 265.203 kb on - strand at 265.272 kb on + strand at 265.272 kb on + strand at 265.272 kb on + strand at 265.272 kb on + strand at 265.273 kb on - strand at 265.276 kb on + strand at 265.276 kb on + strand at 265.276 kb on + strand at 265.276 kb on + strand at 265.277 kb on - strand at 265.347 kb on + strand at 265.347 kb on + strand at 265.347 kb on + strand at 265.347 kb on + strand at 265.348 kb on - strand at 265.348 kb on - strand at 265.348 kb on - strand at 265.349 kb on + strand at 265.349 kb on + strand at 265.349 kb on + strand at 265.349 kb on + strand at 265.350 kb on - strand at 265.350 kb on - strand at 265.350 kb on - strand at 265.376 kb on + strand at 265.636 kb on + strand, within H281DRAFT_02130 at 265.637 kb on - strand, within H281DRAFT_02130 at 265.637 kb on - strand, within H281DRAFT_02130 at 265.738 kb on - strand at 265.738 kb on - strand, within H281DRAFT_02130 at 265.782 kb on - strand at 265.860 kb on + strand, within H281DRAFT_02130 at 265.861 kb on - strand, within H281DRAFT_02130 at 265.869 kb on + strand, within H281DRAFT_02130 at 265.869 kb on + strand, within H281DRAFT_02130 at 265.905 kb on + strand, within H281DRAFT_02130 at 265.906 kb on - strand, within H281DRAFT_02130 at 265.918 kb on - strand, within H281DRAFT_02130 at 265.991 kb on - strand, within H281DRAFT_02130 at 266.075 kb on + strand, within H281DRAFT_02130 at 266.075 kb on + strand, within H281DRAFT_02130 at 266.216 kb on + strand, within H281DRAFT_02130 at 266.217 kb on - strand, within H281DRAFT_02130 at 267.054 kb on - strand at 267.217 kb on + strand at 267.217 kb on + strand at 267.217 kb on + strand at 267.217 kb on + strand at 267.397 kb on + strand at 267.397 kb on + strand at 267.398 kb on - strand at 267.478 kb on + strand at 267.512 kb on + strand at 267.513 kb on - strand at 267.513 kb on - strand at 267.513 kb on - strand at 267.513 kb on - strand at 267.691 kb on + strand at 267.691 kb on + strand at 267.692 kb on - strand at 267.692 kb on - strand at 267.886 kb on + strand at 267.886 kb on + strand at 267.887 kb on - strand at 267.887 kb on - strand at 267.954 kb on + strand at 267.955 kb on - strand at 267.955 kb on - strand at 267.955 kb on - strand at 267.955 kb on - strand at 267.973 kb on - strand at 267.979 kb on + strand at 267.979 kb on + strand at 267.979 kb on + strand at 267.979 kb on + strand at 267.980 kb on - strand at 267.980 kb on - strand at 267.980 kb on - strand at 267.982 kb on + strand at 268.056 kb on + strand at 268.056 kb on + strand at 268.056 kb on + strand at 268.056 kb on + strand at 268.056 kb on + strand at 268.057 kb on - strand at 268.057 kb on - strand at 268.086 kb on + strand at 268.086 kb on + strand at 268.086 kb on + strand at 268.108 kb on + strand at 268.108 kb on + strand at 268.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 264,468 - H281DRAFT_02129 0.71 -1.2 264,524 + H281DRAFT_02129 0.75 +0.1 264,525 - H281DRAFT_02129 0.75 +0.6 264,525 - H281DRAFT_02129 0.75 +0.2 264,564 + H281DRAFT_02129 0.77 -1.4 264,564 + H281DRAFT_02129 0.77 +0.3 264,565 - H281DRAFT_02129 0.77 -0.6 264,566 + H281DRAFT_02129 0.77 +0.5 264,567 - H281DRAFT_02129 0.78 -1.0 264,701 - H281DRAFT_02129 0.86 +0.5 264,713 + H281DRAFT_02129 0.87 +1.4 264,714 - H281DRAFT_02129 0.87 -0.3 264,714 - H281DRAFT_02129 0.87 -0.6 264,714 - H281DRAFT_02129 0.87 -0.8 264,714 - H281DRAFT_02129 0.87 -1.0 264,714 - H281DRAFT_02129 0.87 -0.2 264,982 + +0.3 264,983 - +0.7 264,983 - -1.3 265,026 + +0.3 265,033 + +0.1 265,033 + +1.2 265,089 + +0.6 265,089 + -0.1 265,202 + -0.2 265,203 - +1.0 265,272 + +0.3 265,272 + +2.3 265,272 + -1.4 265,272 + +0.1 265,273 - +0.6 265,276 + -0.3 265,276 + -0.0 265,276 + +0.7 265,276 + +0.7 265,277 - +0.8 265,347 + +0.3 265,347 + -0.0 265,347 + -0.5 265,347 + +0.7 265,348 - -0.8 265,348 - +0.2 265,348 - +1.9 265,349 + -0.2 265,349 + +0.2 265,349 + +0.1 265,349 + +0.6 265,350 - +0.1 265,350 - +0.4 265,350 - -0.7 265,376 + +0.1 265,636 + H281DRAFT_02130 0.16 -0.2 265,637 - H281DRAFT_02130 0.16 +1.3 265,637 - H281DRAFT_02130 0.16 +1.6 265,738 - +0.3 265,738 - H281DRAFT_02130 0.21 +1.2 265,782 - +1.3 265,860 + H281DRAFT_02130 0.28 +0.3 265,861 - H281DRAFT_02130 0.28 -0.3 265,869 + H281DRAFT_02130 0.28 -1.2 265,869 + H281DRAFT_02130 0.28 +0.8 265,905 + H281DRAFT_02130 0.30 -0.5 265,906 - H281DRAFT_02130 0.30 +1.6 265,918 - H281DRAFT_02130 0.31 -0.2 265,991 - H281DRAFT_02130 0.35 +0.8 266,075 + H281DRAFT_02130 0.40 -0.5 266,075 + H281DRAFT_02130 0.40 +0.7 266,216 + H281DRAFT_02130 0.47 +1.2 266,217 - H281DRAFT_02130 0.47 +0.0 267,054 - -0.3 267,217 + -0.6 267,217 + +0.8 267,217 + -0.3 267,217 + -0.0 267,397 + -0.4 267,397 + +0.5 267,398 - +0.4 267,478 + -0.6 267,512 + +0.4 267,513 - -0.8 267,513 - -1.4 267,513 - +0.3 267,513 - -0.3 267,691 + +0.8 267,691 + +0.3 267,692 - +0.5 267,692 - +2.3 267,886 + -1.3 267,886 + +0.0 267,887 - -1.0 267,887 - +0.4 267,954 + +0.6 267,955 - +0.8 267,955 - -0.4 267,955 - +0.8 267,955 - -1.5 267,973 - +0.4 267,979 + +0.4 267,979 + +0.6 267,979 + -0.0 267,979 + +0.9 267,980 - -0.0 267,980 - -0.1 267,980 - +0.5 267,982 + -0.9 268,056 + +0.4 268,056 + +0.5 268,056 + +0.3 268,056 + -0.1 268,056 + -0.1 268,057 - -0.9 268,057 - +0.4 268,086 + +0.4 268,086 + +0.0 268,086 + -0.0 268,108 + -0.3 268,108 + +0.8 268,158 - -0.2
Or see this region's nucleotide sequence