Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02034 and H281DRAFT_02035 are separated by 331 nucleotides H281DRAFT_02035 and H281DRAFT_02036 are separated by 247 nucleotides H281DRAFT_02036 and H281DRAFT_02037 are separated by 143 nucleotides
H281DRAFT_02034: H281DRAFT_02034 - Predicted ATPase with chaperone activity, at 155,896 to 156,495
_02034
H281DRAFT_02035: H281DRAFT_02035 - hypothetical protein, at 156,827 to 157,534
_02035
H281DRAFT_02036: H281DRAFT_02036 - Thiol-disulfide isomerase or thioredoxin, at 157,782 to 158,315
_02036
H281DRAFT_02037: H281DRAFT_02037 - two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family, at 158,459 to 159,811
_02037
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.842 kb on - strand at 155.845 kb on + strand at 155.845 kb on + strand at 155.845 kb on + strand at 155.845 kb on + strand at 155.846 kb on - strand at 155.846 kb on - strand at 155.846 kb on - strand at 155.846 kb on - strand at 155.846 kb on - strand at 155.846 kb on - strand at 155.846 kb on - strand at 155.847 kb on + strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.888 kb on + strand at 155.888 kb on + strand at 155.889 kb on - strand at 155.889 kb on - strand at 155.894 kb on + strand at 155.894 kb on + strand at 155.895 kb on - strand at 155.895 kb on - strand at 156.094 kb on + strand, within H281DRAFT_02034 at 156.335 kb on + strand, within H281DRAFT_02034 at 156.379 kb on + strand, within H281DRAFT_02034 at 156.379 kb on + strand, within H281DRAFT_02034 at 156.379 kb on + strand, within H281DRAFT_02034 at 156.379 kb on + strand, within H281DRAFT_02034 at 156.379 kb on + strand, within H281DRAFT_02034 at 156.383 kb on - strand, within H281DRAFT_02034 at 156.505 kb on + strand at 156.525 kb on + strand at 156.549 kb on - strand at 156.572 kb on - strand at 156.575 kb on + strand at 156.575 kb on + strand at 156.575 kb on + strand at 156.575 kb on + strand at 156.575 kb on + strand at 156.575 kb on + strand at 156.576 kb on - strand at 156.576 kb on - strand at 156.576 kb on - strand at 156.576 kb on - strand at 156.576 kb on - strand at 156.576 kb on - strand at 156.720 kb on + strand at 156.740 kb on - strand at 156.751 kb on + strand at 156.752 kb on - strand at 156.832 kb on - strand at 156.906 kb on + strand, within H281DRAFT_02035 at 156.906 kb on + strand, within H281DRAFT_02035 at 156.906 kb on + strand, within H281DRAFT_02035 at 156.907 kb on - strand, within H281DRAFT_02035 at 156.907 kb on - strand, within H281DRAFT_02035 at 156.907 kb on - strand, within H281DRAFT_02035 at 156.907 kb on - strand, within H281DRAFT_02035 at 156.939 kb on + strand, within H281DRAFT_02035 at 157.152 kb on - strand, within H281DRAFT_02035 at 157.205 kb on + strand, within H281DRAFT_02035 at 157.205 kb on + strand, within H281DRAFT_02035 at 157.206 kb on - strand, within H281DRAFT_02035 at 157.206 kb on - strand, within H281DRAFT_02035 at 157.206 kb on - strand, within H281DRAFT_02035 at 157.206 kb on - strand, within H281DRAFT_02035 at 157.211 kb on + strand at 157.270 kb on + strand, within H281DRAFT_02035 at 157.399 kb on + strand, within H281DRAFT_02035 at 157.400 kb on - strand, within H281DRAFT_02035 at 157.400 kb on - strand, within H281DRAFT_02035 at 157.524 kb on + strand at 157.525 kb on - strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.700 kb on + strand at 157.709 kb on + strand at 157.833 kb on + strand at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.975 kb on - strand, within H281DRAFT_02036 at 157.975 kb on - strand, within H281DRAFT_02036 at 158.006 kb on + strand, within H281DRAFT_02036 at 158.006 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.045 kb on + strand, within H281DRAFT_02036 at 158.060 kb on + strand, within H281DRAFT_02036 at 158.109 kb on + strand, within H281DRAFT_02036 at 158.109 kb on + strand, within H281DRAFT_02036 at 158.110 kb on - strand, within H281DRAFT_02036 at 158.122 kb on - strand at 158.250 kb on + strand, within H281DRAFT_02036 at 158.359 kb on + strand at 158.360 kb on - strand at 158.365 kb on + strand at 158.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 155,842 - -0.3 155,845 + +0.2 155,845 + +2.3 155,845 + +0.7 155,845 + -0.7 155,846 - -0.1 155,846 - -0.6 155,846 - +0.7 155,846 - -1.0 155,846 - +0.4 155,846 - -1.5 155,846 - -0.7 155,847 + +0.1 155,848 - -0.3 155,848 - -1.1 155,888 + +0.4 155,888 + +0.4 155,889 - +0.3 155,889 - -0.2 155,894 + +0.7 155,894 + -0.1 155,895 - +0.0 155,895 - -0.0 156,094 + H281DRAFT_02034 0.33 +0.0 156,335 + H281DRAFT_02034 0.73 +0.6 156,379 + H281DRAFT_02034 0.81 -0.2 156,379 + H281DRAFT_02034 0.81 +0.2 156,379 + H281DRAFT_02034 0.81 +0.4 156,379 + H281DRAFT_02034 0.81 -1.1 156,379 + H281DRAFT_02034 0.81 -0.6 156,383 - H281DRAFT_02034 0.81 +0.7 156,505 + -1.5 156,525 + -0.3 156,549 - -1.7 156,572 - -0.9 156,575 + +0.1 156,575 + -0.9 156,575 + +0.3 156,575 + -1.7 156,575 + +0.9 156,575 + +1.0 156,576 - -0.9 156,576 - +1.6 156,576 - -0.1 156,576 - +0.7 156,576 - -0.7 156,576 - -0.3 156,720 + -0.4 156,740 - +0.5 156,751 + +1.1 156,752 - -0.2 156,832 - +0.2 156,906 + H281DRAFT_02035 0.11 +0.3 156,906 + H281DRAFT_02035 0.11 -0.9 156,906 + H281DRAFT_02035 0.11 +0.7 156,907 - H281DRAFT_02035 0.11 -0.1 156,907 - H281DRAFT_02035 0.11 -0.4 156,907 - H281DRAFT_02035 0.11 -1.3 156,907 - H281DRAFT_02035 0.11 +0.1 156,939 + H281DRAFT_02035 0.16 -0.2 157,152 - H281DRAFT_02035 0.46 -0.1 157,205 + H281DRAFT_02035 0.53 +0.2 157,205 + H281DRAFT_02035 0.53 -0.5 157,206 - H281DRAFT_02035 0.54 +0.6 157,206 - H281DRAFT_02035 0.54 +0.7 157,206 - H281DRAFT_02035 0.54 -0.3 157,206 - H281DRAFT_02035 0.54 -1.5 157,211 + +1.3 157,270 + H281DRAFT_02035 0.63 -0.6 157,399 + H281DRAFT_02035 0.81 +0.5 157,400 - H281DRAFT_02035 0.81 -0.4 157,400 - H281DRAFT_02035 0.81 +0.0 157,524 + -0.3 157,525 - +0.2 157,695 + +0.0 157,695 + -0.6 157,695 + +1.7 157,695 + -1.0 157,695 + -0.5 157,695 + -0.4 157,696 - -1.7 157,696 - +0.9 157,696 - +0.5 157,696 - +0.4 157,700 + +0.3 157,709 + -0.5 157,833 + -0.3 157,974 + H281DRAFT_02036 0.36 +1.3 157,974 + H281DRAFT_02036 0.36 -2.6 157,974 + H281DRAFT_02036 0.36 -2.3 157,974 + H281DRAFT_02036 0.36 -1.5 157,975 - H281DRAFT_02036 0.36 -1.6 157,975 - H281DRAFT_02036 0.36 -0.3 158,006 + H281DRAFT_02036 0.42 -0.3 158,006 + H281DRAFT_02036 0.42 -0.7 158,043 + H281DRAFT_02036 0.49 -0.1 158,043 + H281DRAFT_02036 0.49 -0.0 158,043 + H281DRAFT_02036 0.49 -0.3 158,043 + H281DRAFT_02036 0.49 -1.0 158,045 + H281DRAFT_02036 0.49 -1.7 158,060 + H281DRAFT_02036 0.52 +0.7 158,109 + H281DRAFT_02036 0.61 -1.0 158,109 + H281DRAFT_02036 0.61 -1.0 158,110 - H281DRAFT_02036 0.61 -1.9 158,122 - -1.7 158,250 + H281DRAFT_02036 0.88 -1.0 158,359 + +1.3 158,360 - +0.2 158,365 + +0.8 158,366 - +2.0
Or see this region's nucleotide sequence