Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01982 and H281DRAFT_01983 are separated by 269 nucleotides H281DRAFT_01983 and H281DRAFT_01984 are separated by 33 nucleotides H281DRAFT_01984 and H281DRAFT_01985 are separated by 4 nucleotides H281DRAFT_01985 and H281DRAFT_01986 are separated by 6 nucleotides
H281DRAFT_01982: H281DRAFT_01982 - D-methionine transport system substrate-binding protein, at 102,584 to 103,396
_01982
H281DRAFT_01983: H281DRAFT_01983 - Uncharacterized conserved protein YciI, contains a putative active-site phosphohistidine, at 103,666 to 103,956
_01983
H281DRAFT_01984: H281DRAFT_01984 - protein SCO1/2, at 103,990 to 104,607
_01984
H281DRAFT_01985: H281DRAFT_01985 - protoheme IX farnesyltransferase, at 104,612 to 105,517
_01985
H281DRAFT_01986: H281DRAFT_01986 - cytochrome c oxidase assembly protein subunit 15, at 105,524 to 106,633
_01986
Position (kb) 103
104
105 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 103.053 kb on + strand, within H281DRAFT_01982 at 103.053 kb on + strand, within H281DRAFT_01982 at 103.054 kb on - strand, within H281DRAFT_01982 at 103.054 kb on - strand, within H281DRAFT_01982 at 103.054 kb on - strand, within H281DRAFT_01982 at 103.074 kb on + strand, within H281DRAFT_01982 at 103.074 kb on + strand, within H281DRAFT_01982 at 103.074 kb on + strand, within H281DRAFT_01982 at 103.074 kb on + strand, within H281DRAFT_01982 at 103.074 kb on + strand, within H281DRAFT_01982 at 103.075 kb on - strand, within H281DRAFT_01982 at 103.075 kb on - strand, within H281DRAFT_01982 at 103.075 kb on - strand, within H281DRAFT_01982 at 103.075 kb on - strand, within H281DRAFT_01982 at 103.075 kb on - strand, within H281DRAFT_01982 at 103.075 kb on - strand, within H281DRAFT_01982 at 103.075 kb on - strand, within H281DRAFT_01982 at 103.075 kb on - strand, within H281DRAFT_01982 at 103.101 kb on + strand, within H281DRAFT_01982 at 103.131 kb on + strand, within H281DRAFT_01982 at 103.197 kb on + strand, within H281DRAFT_01982 at 103.197 kb on + strand, within H281DRAFT_01982 at 103.197 kb on + strand, within H281DRAFT_01982 at 103.381 kb on + strand at 103.381 kb on + strand at 103.381 kb on + strand at 103.398 kb on + strand at 103.399 kb on - strand at 103.399 kb on - strand at 103.399 kb on - strand at 103.399 kb on - strand at 103.476 kb on + strand at 103.477 kb on - strand at 103.512 kb on + strand at 103.512 kb on + strand at 103.524 kb on + strand at 103.525 kb on - strand at 103.546 kb on - strand at 103.546 kb on - strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.558 kb on + strand at 103.559 kb on - strand at 103.559 kb on - strand at 103.559 kb on - strand at 103.559 kb on - strand at 103.559 kb on - strand at 103.559 kb on - strand at 103.559 kb on - strand at 103.560 kb on + strand at 103.560 kb on + strand at 103.561 kb on - strand at 103.561 kb on - strand at 103.561 kb on - strand at 103.561 kb on - strand at 103.561 kb on - strand at 103.561 kb on - strand at 103.561 kb on - strand at 103.564 kb on + strand at 103.564 kb on + strand at 103.564 kb on + strand at 103.565 kb on - strand at 103.565 kb on - strand at 103.565 kb on - strand at 103.565 kb on - strand at 103.565 kb on - strand at 103.565 kb on - strand at 103.640 kb on - strand at 103.669 kb on + strand at 103.669 kb on + strand at 103.669 kb on + strand at 103.669 kb on + strand at 103.669 kb on + strand at 103.669 kb on + strand at 103.669 kb on + strand at 103.670 kb on - strand at 103.670 kb on - strand at 103.670 kb on - strand at 103.670 kb on - strand at 103.670 kb on - strand at 103.687 kb on + strand at 103.688 kb on - strand at 103.688 kb on - strand at 103.974 kb on + strand at 103.974 kb on + strand at 103.974 kb on + strand at 103.974 kb on + strand at 103.975 kb on - strand at 103.975 kb on - strand at 103.975 kb on - strand at 103.975 kb on - strand at 103.978 kb on + strand at 103.978 kb on + strand at 103.978 kb on + strand at 103.979 kb on - strand at 103.979 kb on - strand at 104.084 kb on + strand, within H281DRAFT_01984 at 104.084 kb on + strand, within H281DRAFT_01984 at 104.084 kb on + strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.085 kb on - strand, within H281DRAFT_01984 at 104.111 kb on + strand, within H281DRAFT_01984 at 104.144 kb on + strand, within H281DRAFT_01984 at 104.148 kb on - strand, within H281DRAFT_01984 at 104.207 kb on - strand, within H281DRAFT_01984 at 104.234 kb on + strand, within H281DRAFT_01984 at 104.235 kb on - strand, within H281DRAFT_01984 at 104.235 kb on - strand, within H281DRAFT_01984 at 104.235 kb on - strand, within H281DRAFT_01984 at 104.287 kb on + strand, within H281DRAFT_01984 at 104.288 kb on - strand, within H281DRAFT_01984 at 104.414 kb on + strand at 104.415 kb on - strand, within H281DRAFT_01984 at 104.610 kb on + strand at 104.611 kb on - strand at 104.611 kb on - strand at 104.613 kb on + strand at 104.637 kb on + strand at 104.638 kb on - strand at 104.676 kb on + strand at 104.731 kb on - strand, within H281DRAFT_01985 at 104.731 kb on - strand, within H281DRAFT_01985 at 104.788 kb on - strand, within H281DRAFT_01985 at 104.824 kb on + strand, within H281DRAFT_01985 at 104.843 kb on + strand, within H281DRAFT_01985 at 104.843 kb on + strand, within H281DRAFT_01985 at 104.844 kb on - strand, within H281DRAFT_01985 at 104.844 kb on - strand, within H281DRAFT_01985 at 104.844 kb on - strand, within H281DRAFT_01985 at 104.844 kb on - strand, within H281DRAFT_01985 at 104.850 kb on + strand, within H281DRAFT_01985 at 104.861 kb on - strand, within H281DRAFT_01985 at 104.861 kb on - strand, within H281DRAFT_01985 at 104.875 kb on - strand, within H281DRAFT_01985 at 104.875 kb on - strand, within H281DRAFT_01985 at 104.938 kb on - strand, within H281DRAFT_01985 at 105.112 kb on + strand, within H281DRAFT_01985 at 105.114 kb on + strand, within H281DRAFT_01985 at 105.114 kb on + strand at 105.114 kb on + strand, within H281DRAFT_01985 at 105.114 kb on + strand, within H281DRAFT_01985 at 105.114 kb on + strand, within H281DRAFT_01985 at 105.114 kb on + strand, within H281DRAFT_01985 at 105.115 kb on - strand, within H281DRAFT_01985 at 105.468 kb on + strand at 105.468 kb on + strand at 105.493 kb on + strand at 105.576 kb on + strand at 105.577 kb on - strand at 105.598 kb on + strand at 105.599 kb on - strand at 105.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 103,053 + H281DRAFT_01982 0.58 -0.6 103,053 + H281DRAFT_01982 0.58 +0.9 103,054 - H281DRAFT_01982 0.58 +0.1 103,054 - H281DRAFT_01982 0.58 -0.3 103,054 - H281DRAFT_01982 0.58 +1.7 103,074 + H281DRAFT_01982 0.60 -0.0 103,074 + H281DRAFT_01982 0.60 -0.4 103,074 + H281DRAFT_01982 0.60 +0.3 103,074 + H281DRAFT_01982 0.60 +0.1 103,074 + H281DRAFT_01982 0.60 -0.0 103,075 - H281DRAFT_01982 0.60 -0.9 103,075 - H281DRAFT_01982 0.60 +1.4 103,075 - H281DRAFT_01982 0.60 -0.1 103,075 - H281DRAFT_01982 0.60 -0.1 103,075 - H281DRAFT_01982 0.60 +0.2 103,075 - H281DRAFT_01982 0.60 +1.0 103,075 - H281DRAFT_01982 0.60 -0.7 103,075 - H281DRAFT_01982 0.60 -0.1 103,101 + H281DRAFT_01982 0.64 +0.5 103,131 + H281DRAFT_01982 0.67 +0.3 103,197 + H281DRAFT_01982 0.75 +0.2 103,197 + H281DRAFT_01982 0.75 +0.2 103,197 + H281DRAFT_01982 0.75 -0.6 103,381 + -0.7 103,381 + -0.0 103,381 + +0.5 103,398 + +0.0 103,399 - -0.7 103,399 - +1.9 103,399 - +0.1 103,399 - +0.9 103,476 + -0.6 103,477 - +0.6 103,512 + +0.0 103,512 + +0.4 103,524 + -0.4 103,525 - -0.3 103,546 - -0.8 103,546 - +0.0 103,558 + -0.2 103,558 + +0.1 103,558 + -1.3 103,558 + -0.2 103,558 + -0.2 103,558 + -0.4 103,558 + -0.1 103,558 + +0.2 103,558 + -0.7 103,558 + +0.8 103,559 - +0.5 103,559 - -0.6 103,559 - +1.1 103,559 - +2.1 103,559 - +0.9 103,559 - +1.7 103,559 - +0.9 103,560 + -0.4 103,560 + +1.0 103,561 - -1.7 103,561 - +0.1 103,561 - +0.8 103,561 - +0.5 103,561 - -0.2 103,561 - +0.3 103,561 - +0.6 103,564 + -0.4 103,564 + -0.4 103,564 + +0.1 103,565 - -0.0 103,565 - -0.3 103,565 - +0.3 103,565 - +0.3 103,565 - -1.4 103,565 - -0.3 103,640 - +0.6 103,669 + -0.2 103,669 + -0.2 103,669 + +0.2 103,669 + -0.2 103,669 + +0.1 103,669 + -1.0 103,669 + -0.2 103,670 - +4.0 103,670 - +1.1 103,670 - -0.4 103,670 - +0.7 103,670 - +1.6 103,687 + -0.1 103,688 - +0.2 103,688 - +0.9 103,974 + +0.4 103,974 + -0.1 103,974 + -0.2 103,974 + -0.3 103,975 - +0.2 103,975 - -0.3 103,975 - -0.6 103,975 - +0.5 103,978 + -0.2 103,978 + -0.0 103,978 + -1.3 103,979 - -2.3 103,979 - -0.3 104,084 + H281DRAFT_01984 0.15 -2.2 104,084 + H281DRAFT_01984 0.15 -1.4 104,084 + H281DRAFT_01984 0.15 -1.4 104,085 - H281DRAFT_01984 0.15 -0.7 104,085 - H281DRAFT_01984 0.15 -1.1 104,085 - H281DRAFT_01984 0.15 -0.9 104,085 - H281DRAFT_01984 0.15 -1.6 104,085 - H281DRAFT_01984 0.15 -1.7 104,085 - H281DRAFT_01984 0.15 -1.4 104,085 - H281DRAFT_01984 0.15 -1.8 104,085 - H281DRAFT_01984 0.15 -2.0 104,085 - H281DRAFT_01984 0.15 -1.3 104,111 + H281DRAFT_01984 0.20 -2.4 104,144 + H281DRAFT_01984 0.25 -0.1 104,148 - H281DRAFT_01984 0.26 -1.5 104,207 - H281DRAFT_01984 0.35 -0.2 104,234 + H281DRAFT_01984 0.39 -0.5 104,235 - H281DRAFT_01984 0.40 -2.7 104,235 - H281DRAFT_01984 0.40 -4.2 104,235 - H281DRAFT_01984 0.40 -1.5 104,287 + H281DRAFT_01984 0.48 -1.3 104,288 - H281DRAFT_01984 0.48 -2.4 104,414 + -0.3 104,415 - H281DRAFT_01984 0.69 -0.6 104,610 + -1.9 104,611 - +0.0 104,611 - -0.9 104,613 + -2.3 104,637 + -1.2 104,638 - -1.4 104,676 + -3.8 104,731 - H281DRAFT_01985 0.13 -3.6 104,731 - H281DRAFT_01985 0.13 -1.3 104,788 - H281DRAFT_01985 0.19 -4.3 104,824 + H281DRAFT_01985 0.23 -2.5 104,843 + H281DRAFT_01985 0.25 -1.9 104,843 + H281DRAFT_01985 0.25 -3.6 104,844 - H281DRAFT_01985 0.26 -4.3 104,844 - H281DRAFT_01985 0.26 -2.8 104,844 - H281DRAFT_01985 0.26 -3.9 104,844 - H281DRAFT_01985 0.26 -1.8 104,850 + H281DRAFT_01985 0.26 -3.7 104,861 - H281DRAFT_01985 0.27 -4.8 104,861 - H281DRAFT_01985 0.27 -3.0 104,875 - H281DRAFT_01985 0.29 -2.4 104,875 - H281DRAFT_01985 0.29 -2.2 104,938 - H281DRAFT_01985 0.36 -2.0 105,112 + H281DRAFT_01985 0.55 -3.6 105,114 + H281DRAFT_01985 0.55 -3.8 105,114 + -1.7 105,114 + H281DRAFT_01985 0.55 -4.3 105,114 + H281DRAFT_01985 0.55 -2.9 105,114 + H281DRAFT_01985 0.55 -3.5 105,114 + H281DRAFT_01985 0.55 -3.5 105,115 - H281DRAFT_01985 0.56 -2.8 105,468 + +2.3 105,468 + -4.3 105,493 + -3.9 105,576 + -1.6 105,577 - -0.1 105,598 + -1.8 105,599 - -1.1 105,599 - -0.3
Or see this region's nucleotide sequence